Glyma19g29820 - SoyBase

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Report for Sequence Feature Glyma19g29820

Feature Type:	gene_model
Chromosome:	Gm19
Start:	37525575
stop:	37529740
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g29820

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G08680	AT	Annotation by Michelle Graham. TAIR10: ARF GAP-like zinc finger-containing protein ZIGA4 \| chr1:2762820-2768387 FORWARD LENGTH=648	SoyBase	E_val: 2.00E-69	ISS
GO:0046777	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR23180	Panther	CENTAURIN/ARF	JGI		ISS
PTHR23180:SF87	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01412	PFAM	Putative GTPase activating protein for Arf	JGI		ISS
UniRef100_B9SY84	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: HIV-1 rev binding protein, hrbl, putative n=1 Tax=Ricinus communis RepID=B9SY84_RICCO	SoyBase	E_val: 1.00E-75	ISS
UniRef100_I1N8G5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1N8G5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g29820

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g29820 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma19g29820

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g29820

Limit To All Plant Sequences

>Glyma19g29820.1   sequence type=CDS   gene model=Glyma19g29820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TATGATGTACAAGCCTTTAAATTGTTTATCTTTCTGTCATGCAGTCGTGAGTTTACCCATCGAGTGAAGTCTGTATCTATGGCAAAGTTCAATTCACGAGAAGTTGATGCTCTTCAAAATGGGGGTAACCAGCGCACAAGGCAAATATATTTGAAAAATTGGGACTTCCAAAGGCTGCGATTGCCAGATAGCAGTAATGTTGATAAAATAAGAGAGTTTATAAGGAATGTATATTGTGGATCAAAGATATGCTGCAGCAAAAGTCCTAGAATCCATGAAGATGATACAAGGTATGCCAGTTCCTATCACTCATATTCTCAAACTGCTGCACTGACCAGGAAGCCTGGTTCAGATAAAGTTTGTTACGAAGGAAAGATAAGTAGTATTATCTTTAGTCCTGGTAGCTTCAGCAAACATTCATATGATGACAGATTTGCAAATGAGGGATCTGGTCCAAGAATCTCTGACTTTTCTATGTCTAATGGTGGTGAGCAAATCAAAACTGATGTTCAGCATTCTGATGCAGATGGAATTCATCGTCTACAGACAACATGCCTTATTTTTCTAATTGTCCCAGCCCAAACTAAAACTACCTCATTGGGATCAACAGACAGCAACCTGTCATACTTAAGATCTTACAGTTCTGGTGGTTTAGTTGATTTTTTCTCAGAACCATTCCAAGCTTCTGGACCCCATCAAAATAAAGTGTCTTGTACTCCACAACCATTTGATCTGGGAAGTACTGCTTCATCAGTGGATCTGTTTCAGTCATCTGCTTTATCTGCAATCCCTTCTTTCAATGAGCTTCAACCAGTGAAAGCATTCCAATCCTTATCTGTTGACTTTATGGATCTGTCTCAGCAGCCATCTGCTGCAATGCCAAATGAGAAGTCACTGGAGTTGTCTGTCCCTAAAAATGAAGGATGGGCAACATTTGATACGCCTCAGCACACAACATCTACTGGACAAGTAGAAATTCCAGCAGTACCTTCAACTGCTGACTCCTTGCAGGAAATTTTTTTTGAACTTAAATGCAAATATGCTATGTCCATGTTCGGAAACTTCTATGATCCATGGAATGCATTTAAATATTCTGCCACCTCTGTTCCTGTGGATGCCCTTAATCAAGGGTTACAAATGCATGATCTTCCATCAACTGATGATCAGTTTTTTGATTTAAGAGCTTCTAAGGTTGGTATCTATATGATGCTTTTCTTCTACCAGGGATCCAATAAAGGTGGTATGCTAGGCATTGTGCCTGTTGCTAGGTTTGATCATGATCTTTCATTGCATTTTGTTTGTGGCTCACCATCTAAAAAAGTTGCTCAACTCACTCTACAAGCTGCTCTGCCAGATTCCCAGCTATCACCCACCTTCCAAAGTGGTATTGCTGAACCATGGCTCCCTCAGAATACACTAAACCCTTATGTCTCCTCTGCAGGACAA

Predicted protein sequences of Glyma19g29820

Limit To All Plant Sequences

>Glyma19g29820.1   sequence type=predicted peptide   gene model=Glyma19g29820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
YDVQAFKLFIFLSCSREFTHRVKSVSMAKFNSREVDALQNGGNQRTRQIYLKNWDFQRLRLPDSSNVDKIREFIRNVYCGSKICCSKSPRIHEDDTRYASSYHSYSQTAALTRKPGSDKVCYEGKISSIIFSPGSFSKHSYDDRFANEGSGPRISDFSMSNGGEQIKTDVQHSDADGIHRLQTTCLIFLIVPAQTKTTSLGSTDSNLSYLRSYSSGGLVDFFSEPFQASGPHQNKVSCTPQPFDLGSTASSVDLFQSSALSAIPSFNELQPVKAFQSLSVDFMDLSQQPSAAMPNEKSLELSVPKNEGWATFDTPQHTTSTGQVEIPAVPSTADSLQEIFFELKCKYAMSMFGNFYDPWNAFKYSATSVPVDALNQGLQMHDLPSTDDQFFDLRASKVGIYMMLFFYQGSNKGGMLGIVPVARFDHDLSLHFVCGSPSKKVAQLTLQAALPDSQLSPTFQSGIAEPWLPQNTLNPYVSSAGQ

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