Glyma19g29760 - SoyBase

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Report for Sequence Feature Glyma19g29760

Feature Type:	gene_model
Chromosome:	Gm19
Start:	37499170
stop:	37501892
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g29760

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G08710	AT	Annotation by Michelle Graham. TAIR10: F-box family protein \| chr1:2771720-2773250 FORWARD LENGTH=274	SoyBase	E_val: 6.00E-83	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
UniRef100_G7L2L8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F-box protein SKIP24 n=1 Tax=Medicago truncatula RepID=G7L2L8_MEDTR	SoyBase	E_val: 4.00E-103	ISS
UniRef100_I1N8G1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N8G1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g29760

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g29760 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g119400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g29760

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g29760

Limit To All Plant Sequences

>Glyma19g29760.2   sequence type=transcript   gene model=Glyma19g29760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTAAATAAATAAATTTAATATAATGTATAATATATATAATAATTTCCTACAAAACGTGGAGGAGCAGAGCGTCTTCCCTATCGCGCAGGAGAATGTGTTGGCTTCTTCTCCCCGACGAACTGTGGAGGCGAATTCTGGAGATCGGAATCGAGAGCAACGGTTTCAGTTACAAGGATCTCTGCTGCGTCTCAATCTCATGCCGCCGCCTTCATCGCCTCTCCTCGGAAGAACCTCTTTGGAACCGTCTTCTCTTCTCTGACTATCCCCAATCCCAATCTCACCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTAAATCTCTTTACAGATTAAGGTTTGAGAGAGACAAGGAGAGGAGAATAGCTGCTCATAGGAGGGCTGTGCTGAGAAAGGAAAGCCAGGTTGCCGAACATTCCAGAAGGCTCAAAGATATGAAGACACGTCTCGCTCAAGAAACCACCAAAGCCACGCAAACTGCTCAAGACTTGTCCAATTTGCGCAGGCTCAGACAAGCCTTTGTAGCTTTGAATGTGTGGCAACCAGAGGTTGTCCGGGGTAGGCAAAAACAAATGGTAGAGCAAAGTGTTGTGCCTGCTGAATGTCGGATACATGCGCTTGAGATGGAATTCAAGCTTTGTAAGCAACAGATTCTGGGATTGGAGAAGTCCTATAAAGATGAAAAGCGCAGACTTGATACTGCAAAAGAAGAGTTGGCATCTATGAAGTATCACCCTGTACAGGAGCATAAGCCCACAAGTGGAGGGGAGAATGAACATGTCAAGCGGAAGAAGTTGAAAATATGCAATAGCTGAAGACGTTGCATTGGATGATGAGCAATGTTCTAGACAGATGAATTTTGCTGGTCTTTCTTCCATTGAAACTGGGAATTTGTTTCTGCCATGAAGACTGACTGCACAAATGATTAGCAATACCTGTTGAAAACTTGAATAAGTTAATAAAAAAAAGTCTTAAAATCATTATGTGTAACTTAAGAGTTAAGATGACTTAGTTGGTCACTCAGTTGTAGCCAGTGGACTTCGAGGAAACCTTGTAGTTTGAGGAAAGCAAAAAGCATATCATAGGAGGGAGTACATTATGTAGTCATTGTAAATTTATGTTTTGTTAGTACTTTATATTCTGTTGTGCGTTGTACAAGTTCTTTTGTTGAATTATCCCCTTCACATAGCCATTTGTTGATGTTTTAGTTATTTGACTATAGGGATGAAAACATGTAGTTTTTAGGTAGAGACTAAAAATTAAAATTGGAACAAGTTTGGAGACCAAAATTAATACATTAACCTTCTTTTAGTTTA

Coding sequences of Glyma19g29760

Limit To All Plant Sequences

>Glyma19g29760.1   sequence type=CDS   gene model=Glyma19g29760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGTTGGCTTCTTCTCCCCGACGAACTGTGGAGGCGAATTCTGGAGATCGGAATCGAGAGCAACGGTTTCAGTTACAAGGATCTCTGCTGCGTCTCAATCTCATGCCGCCGCCTTCATCGCCTCTCCTCGGAAGAACCTCTTTGGAACCGTCTTCTCTTCTCTGACTATCCCCAATCCCAATCTCACCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTAAATCTCTTTACAGATTAAGGTTTGAGAGAGACAAGGAGAGGAGAATAGCTGCTCATAGGAGGGCTGTGCTGAGAAAGGAAAGCCAGGTTGCCGAACATTCCAGAAGGCTCAAAGATATGAAGACACGTCTCGCTCAAGAAACCACCAAAGCCACGCAAACTGCTCAAGACTTGTCCAATTTGCGCAGGCTCAGACAAGCCTTTGTAGCTTTGAATGTGTGGCAACCAGAGGTTGTCCGGGGTAGGCAAAAACAAATGGTAGAGCAAAGTGTTGTGCCTGCTGAATGTCGGATACATGCGCTTGAGATGGAATTCAAGCTTTGTAAGCAACAGATTCTGGGATTGGAGAAGTCCTATAAAGATGAAAAGCGCAGACTTGATACTGCAAAAGAAGAGTTGGCATCTATGAAGTATCACCCTGTACAGGAGCATAAGCCCACAAGTGGAGGGGAGAATGAACATGTCAAGCGGAAGAAGTTGAAAATATGCAATAGCTACGTTGCATTGGATGATGAGCAATGTTCTAGACAGATGAATTTTGCTGGTCTTTCTTCCATTGAAACTGGGAATTTGTTTCTGCCATGA

>Glyma19g29760.2   sequence type=CDS   gene model=Glyma19g29760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGTTGGCTTCTTCTCCCCGACGAACTGTGGAGGCGAATTCTGGAGATCGGAATCGAGAGCAACGGTTTCAGTTACAAGGATCTCTGCTGCGTCTCAATCTCATGCCGCCGCCTTCATCGCCTCTCCTCGGAAGAACCTCTTTGGAACCGTCTTCTCTTCTCTGACTATCCCCAATCCCAATCTCACCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTAAATCTCTTTACAGATTAAGGTTTGAGAGAGACAAGGAGAGGAGAATAGCTGCTCATAGGAGGGCTGTGCTGAGAAAGGAAAGCCAGGTTGCCGAACATTCCAGAAGGCTCAAAGATATGAAGACACGTCTCGCTCAAGAAACCACCAAAGCCACGCAAACTGCTCAAGACTTGTCCAATTTGCGCAGGCTCAGACAAGCCTTTGTAGCTTTGAATGTGTGGCAACCAGAGGTTGTCCGGGGTAGGCAAAAACAAATGGTAGAGCAAAGTGTTGTGCCTGCTGAATGTCGGATACATGCGCTTGAGATGGAATTCAAGCTTTGTAAGCAACAGATTCTGGGATTGGAGAAGTCCTATAAAGATGAAAAGCGCAGACTTGATACTGCAAAAGAAGAGTTGGCATCTATGAAGTATCACCCTGTACAGGAGCATAAGCCCACAAGTGGAGGGGAGAATGAACATGTCAAGCGGAAGAAGTTGAAAATATGCAATAGCTGA

Predicted protein sequences of Glyma19g29760

Limit To All Plant Sequences

>Glyma19g29760.1   sequence type=predicted peptide   gene model=Glyma19g29760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCWLLLPDELWRRILEIGIESNGFSYKDLCCVSISCRRLHRLSSEEPLWNRLLFSDYPQSQSHPSSSSSSSSSKSLYRLRFERDKERRIAAHRRAVLRKESQVAEHSRRLKDMKTRLAQETTKATQTAQDLSNLRRLRQAFVALNVWQPEVVRGRQKQMVEQSVVPAECRIHALEMEFKLCKQQILGLEKSYKDEKRRLDTAKEELASMKYHPVQEHKPTSGGENEHVKRKKLKICNSYVALDDEQCSRQMNFAGLSSIETGNLFLP*

>Glyma19g29760.2   sequence type=predicted peptide   gene model=Glyma19g29760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCWLLLPDELWRRILEIGIESNGFSYKDLCCVSISCRRLHRLSSEEPLWNRLLFSDYPQSQSHPSSSSSSSSSKSLYRLRFERDKERRIAAHRRAVLRKESQVAEHSRRLKDMKTRLAQETTKATQTAQDLSNLRRLRQAFVALNVWQPEVVRGRQKQMVEQSVVPAECRIHALEMEFKLCKQQILGLEKSYKDEKRRLDTAKEELASMKYHPVQEHKPTSGGENEHVKRKKLKICNS*

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