Glyma19g29710 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma19g29710

Feature Type:	gene_model
Chromosome:	Gm19
Start:	37440189
stop:	37444915
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g29710

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G17790	AT	Annotation by Michelle Graham. TAIR10: zinc finger (Ran-binding) family protein \| chr5:5869810-5872671 REVERSE LENGTH=758	SoyBase	E_val: 0	ISS
GO:0009658	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast organization	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR23238	Panther	RNA BINDING PROTEIN	JGI		ISS
PTHR23238:SF15	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00641	PFAM	Zn-finger in Ran binding protein and others	JGI		ISS
UniRef100_G7L2L0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger protein VAR3 n=1 Tax=Medicago truncatula RepID=G7L2L0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233EA07	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EA07 related cluster n=1 Tax=unknown RepID=UPI000233EA07	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g29710

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g29710

Paralog	Evidence	Comments
Glyma03g00950	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g29710 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g118900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g29710

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g29710

Limit To All Plant Sequences

>Glyma19g29710.1   sequence type=CDS   gene model=Glyma19g29710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGGCGTGGCCCCAAGGTTCCTCTTCCTCCTCGCCACTCCCTTCCCTCTTCTCCGCCGCCACCACCACCACCACCACCACCGCAACCTCTTCCTCTTATCCACCCATTCCCTCCACCTCTCTTCTTCTCCCTCTCCTCTCCCACTCAAACTCAAAGCCTCCCAATCCCAAGCTTCCTCATTCTCCTCCTCCTCCTGGCCCGAGTGGTCCTCATTCCTCTCCCACATCTCCTCCGCCGGCTACCTCCCTTCCCTCCCCGACCAAACCTTCACCGCCGCCGCCGAACGGCTCTCCTACTCCTTCCTCCGCGACGCCACCGCCTTCCTGGCCTTCGCCCGCGACCGACCTAACCTTCTCAGGTTGCTTTCTACGAGAGACATTGCAGCGGTGGTTGAGCACGGCTCCCCCTTTCTCTTCCGCGACGCCGACGACTCCGTCAGGAAGATGAAGTCCTTTCTCTCCAACGGTGACGCCAATGTGTTGGACACTGATAGAGCAAATACAGTTGATCTAATGAAGTTTTTGCTGAGTTATGCAAGTAACCCATTTTTCTCTTCAGAAGGCAACAGTCTCAATAAAAGAGATCTTGTTGAATCATCTGTTAGAAATCTATTTGGTGAACTTTTCAAGCTGAATTATAGTGCACCTGGACCAAATGCTTTTGATTCAGTGCAAAGTCAAATGGCTGGCAGATTTGGACTGACAAAGCCTCCTGGACAAAAAATTGAAATGAAGAGGGGTGATTGGCTTTGCCCCAGGTGTAATTTCATGAATTTTGCAAGAAATATCAAATGTCTTGAGTGTGAGGAAGCAAGGCCAAAAAGACAACTGGCTGGAGGTGAATGGGAATGTCCTCAGTGTGATTTCTATAACTATGGGAGGAATATGACTTGCTTAAGGTGTGATTGCAAGCGACCTGGACAAATATCTCTGGGTGCCACCAATACCATGCCAAATATGGGGTACGAAAATGGAAACAATCCTAATACTTCAGACATTGATGCTAGGTTAGCTGCTAATGAAGAAAAAGCACAACGTTGGTTTAGCAAGGTTTCTCAACTAGACAGCAGTGCTGATATTAACAGTGTCATGGCAGATGAAGATTTTCCTGAAATAATGCCATTGAGGAAAGGAGTGAATAGATTTGTCGTGAGCACAAGAAAGACTCCACTGGAGAGGAGGTTGGCTAATGCTCAATACAAGAGAAACTTGTCCAATAATGACATTCCCGGGATTGAGGATTCTAAAGCTGGGGAGCCAATCAAATCCCATGACAATCTGGATGAAATGCTAAGACGTTCAGGTGGCCTTCCTCAATTTGACAATAACAACTTTGTTGATGAACAAAATGCCAGTGGAGACAGCCATCCTTCATTTGCTAGCAATACTTCACATTTTAACAATGTGAAAGGGAGCTACACTAGTACTGTTCCTCCCATTCCATTGTCTGCAGATGCACTTTCCCAAAAGTCTGAGAACTTGCTAGCAGAGGAGAGCAAAAAGGTGGTATTAGACGCTGATGTTGGATATGCTAGATTGGGAGACTGTTCACAACTTTCTAATAATTCTACTAGCCAAAATATCACAGAGGAGGACAAGGAGAAAGAGCAAGGTGAAAAATCTGAGAGGTGGTTTAGAAAGGTTGCTGAGCTGAATGATTTTCCAGATATACCAAGTGCAATATCTGATGAGGATTTCCCTGAAATAATGCCCATGCGCAAAGGAGAAAATCGATTTGTTGTTAGCAAGAAAAAAGATCGTTCTTTGACTACACCAGCATATAAGAGACTTGCGGCCATGGAACAATCTGGCAAAACCAACTTTGTCCCCTTTGTTCCCTTTCCCCCTGATTATTTTGCCAAAAAGGACAAGCAGCAGGAAGATGGAACAGATTCATCAGTGGCAGATGCAACTGCTTTGACGGATAGGGCTGATGATGATACATCTTTCATATCTGAGGTGGTGCAGCAGCCTCCAGAGATGTCAGTTGATGCTAGAGCTCAACGTGGACAGAGTCCAAATCCTTCTGAACAAAGCTCAAATAACAATGATGTTGGTTCTATGTATGGGGCAACAACCAGTGGAAATTCAAGGCAGAGTTTCAATCAAGATCAGGTTCCAAATTTGACTGGGAGTTCATCCCCGGAACCAGCATCTGAGACCCAGAGTGGTAGAGCAGAGTGGACAAGAAAGAGTTTGGAGGGGTCAGCTGTGAAGGAACCAGATCCTTTGGACATGTCAGAGGAGGCAAAGGCTGAGAGGTGGTTCCGTCGCATTGCACAGATTAAGGATATTTCTGAGCTCAGTCAAATTCCAGATGAAGATTTTCCTTCAATAATGCCTATGCGCAAAGGGGTGAACAGATTTGTTGTAAGCAAGAGGAAAACACCATTGGAAAGGAGATTGACGTCTCAGCAGTACAGAAGAAATCTTCCAACCGCGAGCTCAGATCCAATTAAAAAAGAAAATGAAGGTAGCTGA

Predicted protein sequences of Glyma19g29710

Limit To All Plant Sequences

>Glyma19g29710.1   sequence type=predicted peptide   gene model=Glyma19g29710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGVAPRFLFLLATPFPLLRRHHHHHHHRNLFLLSTHSLHLSSSPSPLPLKLKASQSQASSFSSSSWPEWSSFLSHISSAGYLPSLPDQTFTAAAERLSYSFLRDATAFLAFARDRPNLLRLLSTRDIAAVVEHGSPFLFRDADDSVRKMKSFLSNGDANVLDTDRANTVDLMKFLLSYASNPFFSSEGNSLNKRDLVESSVRNLFGELFKLNYSAPGPNAFDSVQSQMAGRFGLTKPPGQKIEMKRGDWLCPRCNFMNFARNIKCLECEEARPKRQLAGGEWECPQCDFYNYGRNMTCLRCDCKRPGQISLGATNTMPNMGYENGNNPNTSDIDARLAANEEKAQRWFSKVSQLDSSADINSVMADEDFPEIMPLRKGVNRFVVSTRKTPLERRLANAQYKRNLSNNDIPGIEDSKAGEPIKSHDNLDEMLRRSGGLPQFDNNNFVDEQNASGDSHPSFASNTSHFNNVKGSYTSTVPPIPLSADALSQKSENLLAEESKKVVLDADVGYARLGDCSQLSNNSTSQNITEEDKEKEQGEKSERWFRKVAELNDFPDIPSAISDEDFPEIMPMRKGENRFVVSKKKDRSLTTPAYKRLAAMEQSGKTNFVPFVPFPPDYFAKKDKQQEDGTDSSVADATALTDRADDDTSFISEVVQQPPEMSVDARAQRGQSPNPSEQSSNNNDVGSMYGATTSGNSRQSFNQDQVPNLTGSSSPEPASETQSGRAEWTRKSLEGSAVKEPDPLDMSEEAKAERWFRRIAQIKDISELSQIPDEDFPSIMPMRKGVNRFVVSKRKTPLERRLTSQQYRRNLPTASSDPIKKENEGS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain