Glyma19g29700 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma19g29700

Feature Type:	gene_model
Chromosome:	Gm19
Start:	37432368
stop:	37436871
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g29700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G03240	AT	Annotation by Michelle Graham. TAIR10: frataxin homolog \| chr4:1423685-1424758 REVERSE LENGTH=187	SoyBase	E_val: 1.00E-62	ISS
GO:0006979	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to oxidative stress	SoyBase	N/A	ISS
GO:0009060	GO-bp	Annotation by Michelle Graham. GO Biological Process: aerobic respiration	SoyBase	N/A	ISS
GO:0009790	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development	SoyBase	N/A	ISS
GO:0042542	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide	SoyBase	N/A	ISS
GO:0048825	GO-bp	Annotation by Michelle Graham. GO Biological Process: cotyledon development	SoyBase	N/A	ISS
GO:0051301	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell division	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0004322	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ferroxidase activity	SoyBase	N/A	ISS
KOG3413	KOG	Mitochondrial matrix protein frataxin, involved in Fe/S protein biosynthesis	JGI		ISS
PTHR16821	Panther	FRATAXIN	JGI		ISS
PF01491	PFAM	Frataxin-like domain	JGI		ISS
UniRef100_G7KHT5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Frataxin-like protein n=2 Tax=Medicago truncatula RepID=G7KHT5_MEDTR	SoyBase	E_val: 6.00E-83	ISS
UniRef100_I1N8F6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N8F6_SOYBN	SoyBase	E_val: 8.00E-137	ISS

Expression Patterns of Glyma19g29700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g29700

Paralog	Evidence	Comments
Glyma03g00960	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g29700 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g118800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g29700

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g29700

Limit To All Plant Sequences

>Glyma19g29700.1   sequence type=CDS   gene model=Glyma19g29700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTCAAAGCTGCTTTTGAAGAGAAGGCTCTTTAGGTTTTTGCAACTGTCACAACCTTCTTTTTCTTCCATTCATGCAGCCCCAATCCTTTCTGTAAAAGCTTCAGAATTCATGTTCCCCTACAAGGAGAATGCCCTTCTTCCTCCTCTCTCTTCTTCTTCTAGAAACTTCTGCTCTCGCAGTTTTAATCTTGATGAATCTCAAGGCCCCCTGACTATTGATTACAGTTCTCTACTGCAGGAGGGTGAATTCCACAGACTGGCTGATTCCACAATACATAGCCTCCAAGAGAAATTAGAGGACTATGGAGACTCAGTTGAAGTTGATGGATTTGACATAGACTACGGCAATGATGTTTTGACTATAAAACTTGGCGATCTTGGCACCTATGTATTGAACAAACAAACACCAAATAGACAACTTTGGCTGTCTTCTCCAGTGAGTGGTCCTTCAAGGTTTGATTGGGATCGGGATACTAAAGCTTGGATTTATAGGCGGAACAAAGCAAACTTGTATAAAATTTTGGAAGGCGAGTTTGAGCAGTTATGTGGCAAACCTATTGATCTTTCCTAA

Predicted protein sequences of Glyma19g29700

Limit To All Plant Sequences

>Glyma19g29700.1   sequence type=predicted peptide   gene model=Glyma19g29700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASKLLLKRRLFRFLQLSQPSFSSIHAAPILSVKASEFMFPYKENALLPPLSSSSRNFCSRSFNLDESQGPLTIDYSSLLQEGEFHRLADSTIHSLQEKLEDYGDSVEVDGFDIDYGNDVLTIKLGDLGTYVLNKQTPNRQLWLSSPVSGPSRFDWDRDTKAWIYRRNKANLYKILEGEFEQLCGKPIDLS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain