Glyma19g29610 - SoyBase

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Report for Sequence Feature Glyma19g29610

Feature Type:	gene_model
Chromosome:	Gm19
Start:	37285687
stop:	37288840
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g29610

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G39660	AT	Annotation by Michelle Graham. TAIR10: cycling DOF factor 2 \| chr5:15878920-15880712 FORWARD LENGTH=457	SoyBase	E_val: 2.00E-63	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PF02701	PFAM	Dof domain, zinc finger	JGI		ISS
UniRef100_A2Q4B2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger, Dof-type n=1 Tax=Medicago truncatula RepID=A2Q4B2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E31A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E31A related cluster n=1 Tax=unknown RepID=UPI000233E31A	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g29610

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g29610

Paralog	Evidence	Comments
Glyma03g01030	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g29610 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g118000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g29610

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g29610

Limit To All Plant Sequences

>Glyma19g29610.2   sequence type=CDS   gene model=Glyma19g29610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCAGAAAGAGAAGGGTCCGGGTATCAGGCTATTTGGAAGGAAGATTCCGGTGCCGGAATGTCAGATTCCGGCAAACTCTGGACCCACGGATACTTGCTGCAGCATAAAGAAAACAGAACTCAAAATACCTAGTGAATGTGGAGAAAACTCTGAGCAACAAGAAAATTCTTCTGATTCAAGGGATAGTAAACAAGAGTCCCAACATAAAGTGCAGGAAAATGAGCCAATTGTAAATCCCAAGCCTGTGGAAGATAATATGGAGACTGGTAGCTCTGATCAAGATAAAGTCTTAAAGAAACCCGACAAGATTCTTCAGTGCCCACGATGCAACAGTATGGACACCAAGTTTTGTTATTTTAATAACTACAATGTCAATCAACCTCGACACTTCTGCAAGAACTGCCAAAGGTATTGGACTGCTGGTGGAACAATGAGAAATGTTCCCATAGGTGCTGGGAGACGGAAGAATAAGCACCTAGCCTCTCAATACCAACACATTATCGTAACCTCTGATGGAATTCCAGCCTCCAGGCTAGAAACCACAGACTCGTCTGGTCTCCAACAGCAACATATTGCTAGTCTTGAATCCTCAGTTTCTTTCAGGTCTTCAGCAGATAATTGCACCATGTTGAAATTTGGTACCGATACCCCTCTTTGCAAATCGATGGATTCAATGCTTAATCTTAGAGACCAGAGAAGATGTGCTGATGCAAGTTCTATCAGCTGTGTAGAGTATAGAGGGGAACCATCCTTATGTGGATCTTCTGTGATGACTAATGGTGCTCAAGGAAATGAATTATCAGAACATAATACATCAAATTGGTTGCAATGTTACCCTGTTCCTCCATGGGTATTACCTTATCCAGGTTGGAATAATGTGAATTCCATGGAAGCGGTTCATCGATCTTCAGCACCAATGTGCAATCCATATAATAACACTGGTCCTACAGCAATGCAATGGTGTCCCACACCAATGGTTGCAATTCCTGGCATGTGCCCACCAAGCATTCCTTTGCAATTTGTACCACCATCATACTGGAGTGGAACGCCACTTTGGAATGCTGGAACTGGGGCAGTGTCAATAGGATCCAATGCTTGCCTTTCGCCGACTTCCTCGACTAATAACAGTTGCTGCTCAGGCAATGGCTCACCAACACTTGGAAAACACACTAGAGATACAGTTTGCACTGATGAAGAGAAATCAGAAAAGTGTGTTTTGGTTCCAAAGACCATTAGAATTGATGCCCCAAATGAGGCCTCAAAAAGTCCTATAATAAGAGCTACATTAGCTATCAAGCTTGATAAGCAGCAATTTGTATCAAATGGTGATATTTTGAAAAAAATTGAACCAAAAGAAGGCAAAGATCGTGTGTTGGGTGCCTCTCAAATCTTGGAAGCCAATCCGGCAGCTATTTCTCGTGCTCATGCATTTCAGGAGAGCTTATAG

Predicted protein sequences of Glyma19g29610

Limit To All Plant Sequences

>Glyma19g29610.2   sequence type=predicted peptide   gene model=Glyma19g29610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSQKEKGPGIRLFGRKIPVPECQIPANSGPTDTCCSIKKTELKIPSECGENSEQQENSSDSRDSKQESQHKVQENEPIVNPKPVEDNMETGSSDQDKVLKKPDKILQCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHLASQYQHIIVTSDGIPASRLETTDSSGLQQQHIASLESSVSFRSSADNCTMLKFGTDTPLCKSMDSMLNLRDQRRCADASSISCVEYRGEPSLCGSSVMTNGAQGNELSEHNTSNWLQCYPVPPWVLPYPGWNNVNSMEAVHRSSAPMCNPYNNTGPTAMQWCPTPMVAIPGMCPPSIPLQFVPPSYWSGTPLWNAGTGAVSIGSNACLSPTSSTNNSCCSGNGSPTLGKHTRDTVCTDEEKSEKCVLVPKTIRIDAPNEASKSPIIRATLAIKLDKQQFVSNGDILKKIEPKEGKDRVLGASQILEANPAAISRAHAFQESL*

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