Glyma19g29580 - SoyBase

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Report for Sequence Feature Glyma19g29580

Feature Type:	gene_model
Chromosome:	Gm19
Start:	37216282
stop:	37231208
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g29580

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G09360	AT	Annotation by Michelle Graham. TAIR10: Cyclin/Brf1-like TBP-binding protein \| chr3:2873796-2878432 FORWARD LENGTH=604	SoyBase	E_val: 1.00E-149	ISS
GO:0006352	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, initiation	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006413	GO-bp	Annotation by Michelle Graham. GO Biological Process: translational initiation	SoyBase	N/A	ISS
GO:0007062	GO-bp	Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion	SoyBase	N/A	ISS
GO:0010440	GO-bp	Annotation by Michelle Graham. GO Biological Process: stomatal lineage progression	SoyBase	N/A	ISS
GO:0031048	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA	SoyBase	N/A	ISS
GO:0045132	GO-bp	Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003743	GO-mf	Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1598	KOG	Transcription initiation factor TFIIIB, Brf1 subunit	JGI		ISS
PTHR11618	Panther	TRANSCRIPTION INITIATION FACTOR IIB-RELATED	JGI		ISS
PTHR11618:SF4	Panther	TRANSCRIPTION INITIATION FACTOR IIB	JGI		ISS
PF00382	PFAM	Transcription factor TFIIB repeat	JGI		ISS
PF07741	PFAM	Brf1-like TBP-binding domain	JGI		ISS
UniRef100_G7L1K5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor IIIB 90 kDa subunit n=1 Tax=Medicago truncatula RepID=G7L1K5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233BD4D	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233BD4D related cluster n=1 Tax=unknown RepID=UPI000233BD4D	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g29580

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g29580

Paralog	Evidence	Comments
Glyma16g03973	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g29580 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g117700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g29580

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g29580

Limit To All Plant Sequences

>Glyma19g29580.4   sequence type=transcript   gene model=Glyma19g29580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AACTTTATAAAACAGGAGCGCGCCGCGCCCTTCCTTCCCTGCCTAACCCACCTTCTCGATCGTGTCGAGCTTTTCATCCCCTCTGTCCCTCTTTCTTTAGTCCTTTCTCACCTCTTTTGTTGCCTTTCTTTCACGTTTTTTCGTTTCGCTCGCGTTGAAATCGCAGAGACCACCGGCACGCCACCGTGAACCACCGCCGCCGCCTCCGTCAGATTTGTATCCACCACAATGGTGTACTGCAGTCACTGTGCCAAAAATGTTGCCGGCGAGCGACTAGATGATGGTTTCTTATGTTGTGGAAGCTGTGGGAGGGTGTTGGAAGATTACTTTTTTGCTGAGGAGCCTTCATTTGTTAAGAATGCGGCAGGGCAGAGTAAATTATCAGGCAATTATGTAAGAACAGTTCAAAGTGAGTACTCTGAATCACGTCAAAGGACTTTAGATAGAGCTTATGATGAAATTAAATATTTAAGTTTTGGCCTTGGAGTTAATGATGAACATATGGCTGAACAAGCTTTGACCTTTTATAAAATAGCGCTTGAGCGAAATTTCACCCGTGGACGTAAATCAGAACAAGTACATGCTGCTTGTCTCTACATTGCATTCCGGCACAACAATAAACCATACCTTCTTATTGATTTTTCAAATTATTTAAGGACAGATGTTTATGTGCTAGGAGCAGTTTTCTTGCAGCTTTGTCAAGTGTTAAGGCTTGGAGAGCACCCAATTGTTCAAAAGCCTGTTGATCCTAGTCTTTTTATTCATAGATATACCAAGAATTTGTTAAAGCGAGGGAGTAAGGCTGTCTCTGATACTGCACTGGCCATTGTTGCAAGCATGAAACGTGACTGGATGCAGACAGGGAGGAAACCTAGCGGATTATGCGGTGCAGCATTATACATATCTGCTCTTGCTCATGGTATTAAGTGCTCTAAGCCGGATATTCTTAAAATTGTCCATGTATGTGAAGCAACATTGACCAAACGATTGGTAGAATTTGAGGATACCGAGTCTTCTAGCTTGACAGTTGAGGAGTTGAATACAATGGCAAAAGAGCATGAAAAAAATTCAATGATAATGCCAGGAGGTGGATTAAAAGGTTGTATTTCAAAAGACCTACTGTGTGAGCACAAGGAGGATAGTGGGGTGACCCATTTTGCACTTGGATTATGTGAAGCTTGCTATAAGGATTTTGATAAGCTCTCTGGTGGACTTGGTGGTGGTTTGGATCCTCCTGCATTCCAGCGTGCTGAGAGGGAAAGATTTAAAAAAACACTTCCTGAGGAGAGTGTCGATGAAGCATGTGCTTTGGCGAATGCATCAAATGATCAGTTTAAGAGCCACAAAGAAGATTTGCATGCCTATGTGCCAGAAAGGGCTAATGTTGAGCATGAGGCCACTAAAGATGGTAAATATGATGATTCTCATAGAGAAGATGAATCAGAAACTTTATCTGATATTGATGATGAAGAAGTTGATTTGTACATTCATGATGAGGAGGGGAAGCATATCAAGAAGTTACTATGGGAAACAGCGAATCGGGAGTATCTTGAGGAGCAGGCAGCCAAGGAAGCAGCTGCAGCAGCTAATAAGAAAGCTTTTGAGGCAAATTTTGAAAACTGTTCGGAGGATTTACTAGCAGCAAGAGAGCTTGCTGCATCTTCTGCTGAAGCCGTGGCAAAATCCAGAAAGGAAATGAGACAGAAACGAGCCTATGAGGCAAAAAATACAAGGCCAGCTCAATCTGCTGCAGAGGCCTTTGGCCAAATGTCTAATAAAAAAAGGAATTTGCAGGGTCTCAAATCTAAAGTCAATTTTGAACTCCTGAATGAATTGTTTGATGAAATGGAAAATACCGATGATCTCAAGAAACCGAAGAAAGTACGGTTTGATCTGCCCCTAGATAATGATGACAATATACCGTCCAAGGTTGAGGACAAAAATGAAGATGAGATGGGATTAGCGGATGAATTCGATGATGAAGGTGATATGGGGGAGATGTATCAAAATACTGAAAATATGGCTGATAAATATTTCCCTGAGGATGGTGATTTCGGCTATGATGACTATGATGATTATTACTAAAATGTTGCTAGATGATGTTTCTGATTTTTTTTAGCAATTCATACTCAACATGGCTGGCAGCGTGGAACCGAAGATTGTCAGAGACCCAGAAATCTTTGGAAGCTAAGTTGCAATCTGATAAGCTAGTATCACTACACGAGCTTTTTTAATGATTCCACATGCTTTAAAGAAAGCTTGGGAATTATTGTACCGGAAAATTTTTAGGTAGGTATTACCAGCATCACTCTGCTTAACACAAAATAGGGGGTTAGATTATGTGTTTCATTTTAAATTATACTTATCTCTAAACATTTTTTTAAATATGACAATCAGGAAGTTGATTATTTATGCTTAGTTTGTGTAGAAATTTTCGCTATGATTCTTCCTAGTACTGCTTTCAAATTTTTTTCCCATCTGAATCAGAGGCATTTTCAATTCTATGAGATGGTGTAAAAGAAGGCACGTGTTTATTCTATTTACTTATAGACACGTGTCAGCTTCTTATTATTCAACCATTTTCTCGCTTTGCTTTTTCCCCCTCACACAATTCTGCTGCAAAAACGCAAGACTTTTACCAGACAGAAATCGAACCCTGGACTTCTTTTCCTAACAGAAGACAGCTTACCAATAAGCCAGCTCTTATTTTGTTCTTCATAAGAGAAATATAA

Coding sequences of Glyma19g29580

Limit To All Plant Sequences

>Glyma19g29580.3   sequence type=CDS   gene model=Glyma19g29580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGTACTGCAGTCACTGTGCCAAAAATGTTGCCGGCGAGCGACTAGATGATGGTTTCTTATGTTGTGGAAGCTGTGGGAGGGTGTTGGAAGATTACTTTTTTGCTGAGGAGCCTTCATTTGTTAAGAATGCGGCAGGGCAGAGTAAATTATCAGGCAATTATGTAAGAACAGTTCAAAGTGAGTACTCTGAATCACGTCAAAGGACTTTAGATAGAGCTTATGATGAAATTAAATATTTAAGTTTTGGCCTTGGAGTTAATGATGAACATATGGCTGAACAAGCTTTGACCTTTTATAAAATAGCGCTTGAGCGAAATTTCACCCGTGGACGTAAATCAGAACAAGTACATGCTGCTTGTCTCTACATTGCATTCCGGCACAACAATAAACCATACCTTCTTATTGATTTTTCAAATTATTTAAGGACAGATGTTTATGTGCTAGGAGCAGTTTTCTTGCAGCTTTGTCAAGTGTTAAGGCTTGGAGAGCACCCAATTGTTCAAAAGCCTGTTGATCCTAGTCTTTTTATTCATAGATATACCAAGAATTTGTTAAAGCGAGGGAGTAAGGCTGTCTCTGATACTGCACTGGCCATTGTTGCAAGCATGAAACGTGACTGGATGCAGACAGGGAGGAAACCTAGCGGATTATGCGGTGCAGCATTATACATATCTGCTCTTGCTCATGGTATTAAGTGCTCTAAGCCGGATATTCTTAAAATTGTCCATGTATGTGAAGCAACATTGACCAAACGATTGGTAGAATTTGAGGATACCGAGTCTTCTAGCTTGACAGTTGAGGAGTTGAATACAATGGCAAAAGAGCATGAAAAAAATTCAATGATAATGCCAGGAGGTGGATTAAAAGGTTGTATTTCAAAAGACCTACTGTGTGAGCACAAGGAGGATAGTGGGGTGACCCATTTTGCACTTGGATTATGTGAAGCTTGCTATAAGGATTTTGATAAGCTCTCTGGTGGACTTGGTGGTGGTTTGGATCCTCCTGCATTCCAGCGTGCTGAGAGGGAAAGATTTAAAAAAACACTTCCTGAGGAGAGTGTCGATGAAGCATGTGCTTTGGCGAATGCATCAAATGATCAGTTTAAGAGCCACAAAGAAGATTTGCATGCCTATGTGCCAGAAAGTATTGGGGCTAATGTTGAGCATGAGGCCACTAAAGATGGTAAATATGATGATTCTCATAGAGAAGATGAATCAGAAACTTTATCTGATATTGATGATGAAGAAGTTGATTTGTACATTCATGATGAGGAGGGGAAGCATATCAAGAAGTTACTATGGGAAACAGCGAATCGGGAGTATCTTGAGGAGCAGGCAGCCAAGGAAGCAGCTGCAGCAGCTAATAAGAAAGCTTTTGAGGCAAATTTTGAAAACTGTTCGGAGGATTTACTAGCAGCAAGAGAGCTTGCTGCATCTTCTGCTGAAGCCGTGGCAAAATCCAGAAAGGAAATGAGACAGAAACGAGCCTATGAGGCAAAAAATACAAGGCCAGCTCAATCTGCTGCAGAGGCCTTTGGCCAAATGTCTAATAAAAAAAGGAATTTGCAGGGTCTCAAATCTAAAGTCAATTTTGAACTCCTGAATGAATTGTTTGATGAAATGGAAAATACCGATGATCTCAAGAAACCGAAGAAAGTACGGTTTGATCTGCCCCTAGATAATGATGACAATATACCGTCCAAGGTTGAGGACAAAAATGAAGATGAGATGGGATTAGCGGATGAATTCGATGATGAAGGTGATATGGGGGAGATGTATCAAAATACTGAAAATATGGCTGATAAATATTTCCCTGAGGATGGTGATTTCGGCTATGATGACTATGATGATTATTACTAA

>Glyma19g29580.4   sequence type=CDS   gene model=Glyma19g29580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGTACTGCAGTCACTGTGCCAAAAATGTTGCCGGCGAGCGACTAGATGATGGTTTCTTATGTTGTGGAAGCTGTGGGAGGGTGTTGGAAGATTACTTTTTTGCTGAGGAGCCTTCATTTGTTAAGAATGCGGCAGGGCAGAGTAAATTATCAGGCAATTATGTAAGAACAGTTCAAAGTGAGTACTCTGAATCACGTCAAAGGACTTTAGATAGAGCTTATGATGAAATTAAATATTTAAGTTTTGGCCTTGGAGTTAATGATGAACATATGGCTGAACAAGCTTTGACCTTTTATAAAATAGCGCTTGAGCGAAATTTCACCCGTGGACGTAAATCAGAACAAGTACATGCTGCTTGTCTCTACATTGCATTCCGGCACAACAATAAACCATACCTTCTTATTGATTTTTCAAATTATTTAAGGACAGATGTTTATGTGCTAGGAGCAGTTTTCTTGCAGCTTTGTCAAGTGTTAAGGCTTGGAGAGCACCCAATTGTTCAAAAGCCTGTTGATCCTAGTCTTTTTATTCATAGATATACCAAGAATTTGTTAAAGCGAGGGAGTAAGGCTGTCTCTGATACTGCACTGGCCATTGTTGCAAGCATGAAACGTGACTGGATGCAGACAGGGAGGAAACCTAGCGGATTATGCGGTGCAGCATTATACATATCTGCTCTTGCTCATGGTATTAAGTGCTCTAAGCCGGATATTCTTAAAATTGTCCATGTATGTGAAGCAACATTGACCAAACGATTGGTAGAATTTGAGGATACCGAGTCTTCTAGCTTGACAGTTGAGGAGTTGAATACAATGGCAAAAGAGCATGAAAAAAATTCAATGATAATGCCAGGAGGTGGATTAAAAGGTTGTATTTCAAAAGACCTACTGTGTGAGCACAAGGAGGATAGTGGGGTGACCCATTTTGCACTTGGATTATGTGAAGCTTGCTATAAGGATTTTGATAAGCTCTCTGGTGGACTTGGTGGTGGTTTGGATCCTCCTGCATTCCAGCGTGCTGAGAGGGAAAGATTTAAAAAAACACTTCCTGAGGAGAGTGTCGATGAAGCATGTGCTTTGGCGAATGCATCAAATGATCAGTTTAAGAGCCACAAAGAAGATTTGCATGCCTATGTGCCAGAAAGGGCTAATGTTGAGCATGAGGCCACTAAAGATGGTAAATATGATGATTCTCATAGAGAAGATGAATCAGAAACTTTATCTGATATTGATGATGAAGAAGTTGATTTGTACATTCATGATGAGGAGGGGAAGCATATCAAGAAGTTACTATGGGAAACAGCGAATCGGGAGTATCTTGAGGAGCAGGCAGCCAAGGAAGCAGCTGCAGCAGCTAATAAGAAAGCTTTTGAGGCAAATTTTGAAAACTGTTCGGAGGATTTACTAGCAGCAAGAGAGCTTGCTGCATCTTCTGCTGAAGCCGTGGCAAAATCCAGAAAGGAAATGAGACAGAAACGAGCCTATGAGGCAAAAAATACAAGGCCAGCTCAATCTGCTGCAGAGGCCTTTGGCCAAATGTCTAATAAAAAAAGGAATTTGCAGGGTCTCAAATCTAAAGTCAATTTTGAACTCCTGAATGAATTGTTTGATGAAATGGAAAATACCGATGATCTCAAGAAACCGAAGAAAGTACGGTTTGATCTGCCCCTAGATAATGATGACAATATACCGTCCAAGGTTGAGGACAAAAATGAAGATGAGATGGGATTAGCGGATGAATTCGATGATGAAGGTGATATGGGGGAGATGTATCAAAATACTGAAAATATGGCTGATAAATATTTCCCTGAGGATGGTGATTTCGGCTATGATGACTATGATGATTATTACTAA

Predicted protein sequences of Glyma19g29580

Limit To All Plant Sequences

>Glyma19g29580.3   sequence type=predicted peptide   gene model=Glyma19g29580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVYCSHCAKNVAGERLDDGFLCCGSCGRVLEDYFFAEEPSFVKNAAGQSKLSGNYVRTVQSEYSESRQRTLDRAYDEIKYLSFGLGVNDEHMAEQALTFYKIALERNFTRGRKSEQVHAACLYIAFRHNNKPYLLIDFSNYLRTDVYVLGAVFLQLCQVLRLGEHPIVQKPVDPSLFIHRYTKNLLKRGSKAVSDTALAIVASMKRDWMQTGRKPSGLCGAALYISALAHGIKCSKPDILKIVHVCEATLTKRLVEFEDTESSSLTVEELNTMAKEHEKNSMIMPGGGLKGCISKDLLCEHKEDSGVTHFALGLCEACYKDFDKLSGGLGGGLDPPAFQRAERERFKKTLPEESVDEACALANASNDQFKSHKEDLHAYVPESIGANVEHEATKDGKYDDSHREDESETLSDIDDEEVDLYIHDEEGKHIKKLLWETANREYLEEQAAKEAAAAANKKAFEANFENCSEDLLAARELAASSAEAVAKSRKEMRQKRAYEAKNTRPAQSAAEAFGQMSNKKRNLQGLKSKVNFELLNELFDEMENTDDLKKPKKVRFDLPLDNDDNIPSKVEDKNEDEMGLADEFDDEGDMGEMYQNTENMADKYFPEDGDFGYDDYDDYY*

>Glyma19g29580.4   sequence type=predicted peptide   gene model=Glyma19g29580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVYCSHCAKNVAGERLDDGFLCCGSCGRVLEDYFFAEEPSFVKNAAGQSKLSGNYVRTVQSEYSESRQRTLDRAYDEIKYLSFGLGVNDEHMAEQALTFYKIALERNFTRGRKSEQVHAACLYIAFRHNNKPYLLIDFSNYLRTDVYVLGAVFLQLCQVLRLGEHPIVQKPVDPSLFIHRYTKNLLKRGSKAVSDTALAIVASMKRDWMQTGRKPSGLCGAALYISALAHGIKCSKPDILKIVHVCEATLTKRLVEFEDTESSSLTVEELNTMAKEHEKNSMIMPGGGLKGCISKDLLCEHKEDSGVTHFALGLCEACYKDFDKLSGGLGGGLDPPAFQRAERERFKKTLPEESVDEACALANASNDQFKSHKEDLHAYVPERANVEHEATKDGKYDDSHREDESETLSDIDDEEVDLYIHDEEGKHIKKLLWETANREYLEEQAAKEAAAAANKKAFEANFENCSEDLLAARELAASSAEAVAKSRKEMRQKRAYEAKNTRPAQSAAEAFGQMSNKKRNLQGLKSKVNFELLNELFDEMENTDDLKKPKKVRFDLPLDNDDNIPSKVEDKNEDEMGLADEFDDEGDMGEMYQNTENMADKYFPEDGDFGYDDYDDYY*

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