Glyma19g29510 - SoyBase

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Report for Sequence Feature Glyma19g29510

Feature Type:	gene_model
Chromosome:	Gm19
Start:	37107697
stop:	37112355
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g29510

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G13020	AT	Annotation by Michelle Graham. TAIR10: Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein \| chr5:4129691-4132089 REVERSE LENGTH=397	SoyBase	E_val: 4.00E-24	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0008284	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of cell proliferation	SoyBase	N/A	ISS
GO:0010413	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process	SoyBase	N/A	ISS
GO:0045492	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF03735	PFAM	ENT domain	JGI		ISS
UniRef100_G7L1J8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ENT domain containing protein n=1 Tax=Medicago truncatula RepID=G7L1J8_MEDTR	SoyBase	E_val: 2.00E-56	ISS
UniRef100_UPI000233E9FE	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E9FE related cluster n=1 Tax=unknown RepID=UPI000233E9FE	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g29510

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g29510 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g117000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g29510

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g29510

Limit To All Plant Sequences

>Glyma19g29510.3   sequence type=transcript   gene model=Glyma19g29510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTCATTCAATCTAAGATGTGCATGTAATTGGCCTTAAATGCCATTAATTTTACCATCAGGGGTTGGGTCTAGCGGAAGGAGCTAGTCTCCCATAACGTGGAGAACCAATGTTCGAATTCCTGCCGGGAGAGGTGCCCACATTTAGTGTCTAACCATACCTTGAACAGGATTGCTTCCGAAGGAGGAGACCTGTGCAAAACCAAAAACAAAAAAAAATGTCATTAATTTTATGCAATGTAACCTCATGGGATAAGGGGTGTAATGGACTTGGAGCATCAAATTCACTACCTGGAAACTGAGGCTTATAGTTCTATTTTGAAGGCTTTCATTGCTCAATCTGATCTTCTTACTTGGGGCAAAGAGGGGCTTATGACTGAGCTGCGAAAGGAACTAAATGTTACAGATATTGAACATGGAGAAATCCTACTGAAAATAAATTCAGACCAGTTAATTAAGCAGATAAGGGAGCAGAGGAAATTGGCATCTCAAGCTAAGGATTATATTAAACCTAGTGCTCCTGATTGTGTTTGTGCTTCGATGGGAAATTCAGTGATAAGAATGAAAACTCCTTCCTCTGCTGCATTTTATACTCAGAAGAAAATGTCACACTGCCAAGCTTCTCTAATTTCCACTCCCATTCCTTCTCCAATGCCTCCAAAATTTAATGATGATCCATTGAATGCTGAGTTTGCCCACGGAAATGTGCAGCAATCTATGGAAATGTTAAATTGTAATGTTCAGTTACCACCTGTTGGAGGAGGAAGAGGACTGAAAGGAAAGTATCCATTGCAGAAGGATTTACACAGATCTCACCTTGTCAAGTTAAAGAAAAGATCTGATTTAATTCAGCTTCGTGCAACAGATAGGGTTATCCACGATGTTAAGAAGATGCTTTTCAGTAGAGGGAAACCTGACCCAGTTGATATTGAGAGAGCAAAAAGGACTCTTACGGAACAAGAAATAGCTATAACTGAAGCACTTGGTAAAGTGGCTAATGTGTTAGAGAGGGGTGATGCACCTAATCAGATGCAACGTTATGAACTCTCTAAGAATACTCCTGGAGGACAAGAAATGATGATACATGCTAATTTCCGTGAACTAATTGGTAATGGTAGGTTGAATAAACATGGGGTTCATTCTGATCTGTGCAGTTAGGGTGATGATTTCATGGCATAGATATGGAGCTTTTAACTCTGATGAGGCTATACAACTTATATAGTGATATTGCTGGATTGGTTTAGTGAACAGTTTACTTGTTTAGGATTAACTAGTAGCTAACCGATGTGAAATGAACACTTTAATGTGGCTTATTTCAACACGTGCCAAATTATACTACTAGTCTACTACTACAAACAGCTTATTTAAGTATATGCTGTAAGTTAGAATCCAATCTGTTCCCATTCTCCAGGCAATGGTTCATATTTCTTATCAGTTATTAATGCTTCACAATCCTGGTAGTCTAAATCATGTATGTGGTCATTGGTCTTCTGATCGTTCATTAAAGGCATTTGTTTTGTATGTGGATATGGATGTGTAGATTGAATCATTTGTTATTAGTGGGGTAGTGGGGGATGAGTCACATTGATCTCCATTTTAGCTGAAGTGATAAATCATCCTAAATAGTATATTTGGTGAGAAGAAAGAACATATA

Coding sequences of Glyma19g29510

Limit To All Plant Sequences

>Glyma19g29510.2   sequence type=CDS   gene model=Glyma19g29510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACTTGGAGCATCAAATTCACTACCTGGAAACTGAGGCTTATAGTTCTATTTTGAAGGCTTTCATTGCTCAATCTGATCTTCTTACTTGGGGCAAAGAGGGGCTTATGACTGAGCTGCGAAAGGAACTAAATGTTACAGATATTGAACATGGAGAAATCCTACTGAAAATAAATTCAGACCAGTTAATTAAGCAGATAAGGGAGCAGAGGAAATTGGCATCTCAAGCTAAGGATTATATTAAACCTAGTGCTCCTGATTGTGTTTGTGCTTCGATGGGAAATTCAGTGATAAGAATGAAAACTCCTTCCTCTGCTGCATTTTATACTCAGAAGAAAATGTCACACTGCCAAGCTTCTCTAATTTCCACTCCCATTCCTTCTCCAATGCCTCCAAAATTTAATGATGATCCATTGAATGCTGAGTTTGCCCACGGAAATGTGCAGCAATCTATGGAAATGTTAAATTGTAATGTTCAGTTACCACCTGTTGGAGGAGGAAGAGGACTGAAAGGAAAGTATCCATTGCAGAAGGATTTACACAGATCTCACCTTGTCAAGTTAAAGAAAAGATCTGATTTAATTCAGCTTCGTGCAACAGATAGGGTTATCCACGATGTTAAGAAGATGCTTTTCAGTAGAGGGAAACCTGACCCAGTTGATATTGAGAGAGCAAAAAGGACTCTTACGGAACAAGAAATAGCTATAACTGAAGCACTTGGTAAAGTGGCTAATGTGTTAGAGAGGGGTGATGCACCTAATCAGATGCAACGTTATGAACTCTCTAAGAATACTCCTGGAGGACAAGAAATGATGATACATGCTAATTTCCGTGAACTAATTGGTAATGGTAGGTTGAATAAACATGGGGTTCATTCTGATCTGTGCAGTTAG

>Glyma19g29510.3   sequence type=CDS   gene model=Glyma19g29510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACTTGGAGCATCAAATTCACTACCTGGAAACTGAGGCTTATAGTTCTATTTTGAAGGCTTTCATTGCTCAATCTGATCTTCTTACTTGGGGCAAAGAGGGGCTTATGACTGAGCTGCGAAAGGAACTAAATGTTACAGATATTGAACATGGAGAAATCCTACTGAAAATAAATTCAGACCAGTTAATTAAGCAGATAAGGGAGCAGAGGAAATTGGCATCTCAAGCTAAGGATTATATTAAACCTAGTGCTCCTGATTGTGTTTGTGCTTCGATGGGAAATTCAGTGATAAGAATGAAAACTCCTTCCTCTGCTGCATTTTATACTCAGAAGAAAATGTCACACTGCCAAGCTTCTCTAATTTCCACTCCCATTCCTTCTCCAATGCCTCCAAAATTTAATGATGATCCATTGAATGCTGAGTTTGCCCACGGAAATGTGCAGCAATCTATGGAAATGTTAAATTGTAATGTTCAGTTACCACCTGTTGGAGGAGGAAGAGGACTGAAAGGAAAGTATCCATTGCAGAAGGATTTACACAGATCTCACCTTGTCAAGTTAAAGAAAAGATCTGATTTAATTCAGCTTCGTGCAACAGATAGGGTTATCCACGATGTTAAGAAGATGCTTTTCAGTAGAGGGAAACCTGACCCAGTTGATATTGAGAGAGCAAAAAGGACTCTTACGGAACAAGAAATAGCTATAACTGAAGCACTTGGTAAAGTGGCTAATGTGTTAGAGAGGGGTGATGCACCTAATCAGATGCAACGTTATGAACTCTCTAAGAATACTCCTGGAGGACAAGAAATGATGATACATGCTAATTTCCGTGAACTAATTGGTAATGGTAGGTTGAATAAACATGGGGTTCATTCTGATCTGTGCAGTTAG

Predicted protein sequences of Glyma19g29510

Limit To All Plant Sequences

>Glyma19g29510.2   sequence type=predicted peptide   gene model=Glyma19g29510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLEHQIHYLETEAYSSILKAFIAQSDLLTWGKEGLMTELRKELNVTDIEHGEILLKINSDQLIKQIREQRKLASQAKDYIKPSAPDCVCASMGNSVIRMKTPSSAAFYTQKKMSHCQASLISTPIPSPMPPKFNDDPLNAEFAHGNVQQSMEMLNCNVQLPPVGGGRGLKGKYPLQKDLHRSHLVKLKKRSDLIQLRATDRVIHDVKKMLFSRGKPDPVDIERAKRTLTEQEIAITEALGKVANVLERGDAPNQMQRYELSKNTPGGQEMMIHANFRELIGNGRLNKHGVHSDLCS*

>Glyma19g29510.3   sequence type=predicted peptide   gene model=Glyma19g29510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLEHQIHYLETEAYSSILKAFIAQSDLLTWGKEGLMTELRKELNVTDIEHGEILLKINSDQLIKQIREQRKLASQAKDYIKPSAPDCVCASMGNSVIRMKTPSSAAFYTQKKMSHCQASLISTPIPSPMPPKFNDDPLNAEFAHGNVQQSMEMLNCNVQLPPVGGGRGLKGKYPLQKDLHRSHLVKLKKRSDLIQLRATDRVIHDVKKMLFSRGKPDPVDIERAKRTLTEQEIAITEALGKVANVLERGDAPNQMQRYELSKNTPGGQEMMIHANFRELIGNGRLNKHGVHSDLCS*

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