SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G03710 | AT | Annotation by Michelle Graham. TAIR10: polyribonucleotide nucleotidyltransferase, putative | chr3:919542-924906 FORWARD LENGTH=922 | SoyBase | E_val: 0 | ISS |
| GO:0006401 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA catabolic process | SoyBase | N/A | ISS |
| GO:0010323 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | SoyBase | N/A | ISS |
| GO:0015995 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chlorophyll biosynthetic process | SoyBase | N/A | ISS |
| GO:0016036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation | SoyBase | N/A | ISS |
| GO:0016120 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carotene biosynthetic process | SoyBase | N/A | ISS |
| GO:0016123 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xanthophyll biosynthetic process | SoyBase | N/A | ISS |
| GO:0031425 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast RNA processing | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0000175 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 3'-5'-exoribonuclease activity | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| GO:0004654 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: polyribonucleotide nucleotidyltransferase activity | SoyBase | N/A | ISS |
| KOG1067 | KOG | Predicted RNA-binding polyribonucleotide nucleotidyltransferase | JGI | ISS | |
| PTHR11252 | Panther | POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE | JGI | ISS | |
| PF00013 | PFAM | KH domain | JGI | ISS | |
| PF00575 | PFAM | S1 RNA binding domain | JGI | ISS | |
| PF01138 | PFAM | 3' exoribonuclease family, domain 1 | JGI | ISS | |
| PF03725 | PFAM | 3' exoribonuclease family, domain 2 | JGI | ISS | |
| UniRef100_O24288 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Polynucleotide phosphorylase n=1 Tax=Pisum sativum RepID=O24288_PEA | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233E9FD | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E9FD related cluster n=1 Tax=unknown RepID=UPI000233E9FD | SoyBase | E_val: 0 | ISS |
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Glyma19g29472 not represented in the dataset |
Glyma19g29472 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g04030 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g116700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g29472.1 sequence type=CDS gene model=Glyma19g29472 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATTTTGGTAGAGACTGCTCATATAGGAAGACAAGCAAGTGGCTCTGTTACAGTTACAGATGGAGAGACTATTGTGTACACAACTGTTTGCTTGGATGATGTTCCTTGTGAACCATCTGACTTTTTCCCTCTTTCTGTTATTTATCAAGAGCGTTTTTCAGCAGCTGGTCGCACTAGTGGAGGTTTTTTTAAGCGAGAAGGAAAGATAAAAGATCATGAGGTTCTTATTTGTAGATTGATTGATAGGCCTCTACGTCCTACAATGCCAAAGGGTTTCTATCATGAAACTCAAATATTATCTTGGGTTTTGAGCTATGATGGATTGCACTCCCCGGATTCTTTGGCTATCACTGCAGCTGGTATAGCAGTTGCACTTTCAGAAGTGCCAATGTCAAAAGCAGTTGCTGGAGTTCGTGTTGGTCTTGTTGGTGATAAGTATATAGTAAATCCTACAACTGAGGAGATGGAACACTCTGAGTTAGACCTCTTGCTGGCTGGCACAGATAATGCAATATTGATGATAGAGGGCTATAGCAATTTTCTTCCAGAAGAGAAATTACTTAAAGCTGTAGAAGTTGGTCAGAATGCAGTGCGAGCAATCTGTAATGAGGTAGAAGCTTTGGTTAAGAAATGTGGGAAGCCAAAGATGTTGGATGCCATCAAGTTGCCTCCTCCCGAACTTTATGAACATGTTGAAGCAATTGCCAGTGATGAGTTAGTAAAAGTTCTTCAAATTAGAAACAAAATTCCCAGAAGGAAAGCCCTTTCATCATTAGAAGAAAAGGTTCTGAAGATACTCACAGAAAACGGGTTTGTCTCAAATGATTCAACACTGAGGAGTAATTCTGAGACCATTGCGGAGATTCTTGAGGTTGAGGATGAAGATGAGGAAGTAATTGTTGATGGTGAAGTTGACGAAGGTGATGTTCATATAAAGCCAACTCCACGTAAACCAGCCCTTTTATTTTCTGAGGTGGATGTGAAGTTGGTATTTAAGGAAGTTACATCTAAATATTGGAGGAAGCGTATGGTAGAGGGGGGGAAAAGAAGCGATGGGCGTACACCTGACGGAATACGTCCAATCTACTCGAGATGTGGTCTATTACCTAGAGCACATGGAAGTACTCTTTTCACAAGAGGCGAGACACAGGCACTAGCAGTTGTTACACTTGGAGATAAACAAATGGCACAAAGAATTGACAGTCTTGATGGTGTTGATGAATTCAAGAGGTTCTATCTGCAGTATTCATTTCCTCCTTCATGTGTTGGGGAAGTTGGCCGGATTGGTGCCCCAAGTAGAAGAGAAATTGGTCATGGGATGCTTGCTGAGAGATCCCTTGAACCAATTTTGCCTTCTGAAGATGATTTCCCTTACACTATACGTGTTGAGAGTACTATCACAGAAAGCAATGGCTCTTCAAGCATGGCTTCTGTTTGTGGAGGTTGCTTAGCATTGCAAGATGCTGGGGTTCCTATTAAGGGTTCTATTGCTGGAATTGCAATGGGTATGGTACTGGACACCAAGGAATTTGGTGGAGATGGAACTCCGCTTATTCTGTCTGACATAACTGGATCTGAAGATGCATCTGGAGATATGGATTTCAAGGTTGCTGGAAATGAAGATGGCATAACTGCATTTCAAATGGACATTAAGGTGGGTGGAATTACTTTGCCCATCATGAGAAAGGCACTTCTACAAGCAAGAGATGGCAGGAAGCATATACTTGGAGCAATGATGAATTCCTCACCTCCTCCAGCAAAAAGACTTTCGAAGTATGCTCCTCTGATTCATGTTATGAAGGTACGACCAGATAGAATAAATCTTATAATTGGTTCTGGTGGGAAAAAAGTGAAGAGCATTATTGAGGAATCTGGAGTAGACACTATTGATACAGAAGATGATGGCACTGTGAAAATATTTGCAAAAGACTTGCCTAGTTTAGAGAAGTCTAAAGCTATTATTAATAGTTTGACGATGGTTCCAACTATTGGTGATATATATAGGAGCTGTGAAATCAAATCAATAGCCTCATATGGAGTTTTTGTAGAGATAGCACCTGGACGAGAGGGACTGTGTCATATCAGTGAACTGAGTTCAGGTTGGCTACCCAAGGCAGAAGATGTTTTCAAAGTGGGAGATCGCATTGATGTAAAGCTTATAGAGATAAATGAAAAGGGACAGCTGCGCCTTAGTCACCGAGCACTGCTTCCTGATACAGAAGCTTCACCGAAGGATGGTTTAGTGGAAGAAAAGACTGAACAGTCTAAGGATAAGTCTAGCACTCCCAATGTCACAGCCTCTTCTAAAAGGAGTTCAGAGGATGATTCTGTGCTTCCTTCTAAAAAGTTTGTCAGGAGATTGGTCAGCTCTTCCCTGGATAAGCCTTTCACTAACAAAGACAAGACAAAGAAGAGTAGCAACAAAGCAGTTGGTAGTGTGTCTGGCAAAGATGAAAGCAGTTTGGTTAGTGGAGAGGCGTAA
>Glyma19g29472.1 sequence type=predicted peptide gene model=Glyma19g29472 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ILVETAHIGRQASGSVTVTDGETIVYTTVCLDDVPCEPSDFFPLSVIYQERFSAAGRTSGGFFKREGKIKDHEVLICRLIDRPLRPTMPKGFYHETQILSWVLSYDGLHSPDSLAITAAGIAVALSEVPMSKAVAGVRVGLVGDKYIVNPTTEEMEHSELDLLLAGTDNAILMIEGYSNFLPEEKLLKAVEVGQNAVRAICNEVEALVKKCGKPKMLDAIKLPPPELYEHVEAIASDELVKVLQIRNKIPRRKALSSLEEKVLKILTENGFVSNDSTLRSNSETIAEILEVEDEDEEVIVDGEVDEGDVHIKPTPRKPALLFSEVDVKLVFKEVTSKYWRKRMVEGGKRSDGRTPDGIRPIYSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDSLDGVDEFKRFYLQYSFPPSCVGEVGRIGAPSRREIGHGMLAERSLEPILPSEDDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKGSIAGIAMGMVLDTKEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPIMRKALLQARDGRKHILGAMMNSSPPPAKRLSKYAPLIHVMKVRPDRINLIIGSGGKKVKSIIEESGVDTIDTEDDGTVKIFAKDLPSLEKSKAIINSLTMVPTIGDIYRSCEIKSIASYGVFVEIAPGREGLCHISELSSGWLPKAEDVFKVGDRIDVKLIEINEKGQLRLSHRALLPDTEASPKDGLVEEKTEQSKDKSSTPNVTASSKRSSEDDSVLPSKKFVRRLVSSSLDKPFTNKDKTKKSSNKAVGSVSGKDESSLVSGEA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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