SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G80750 | AT | Annotation by Michelle Graham. TAIR10: Ribosomal protein L30/L7 family protein | chr1:30349052-30350434 FORWARD LENGTH=247 | SoyBase | E_val: 2.00E-85 | ISS |
| GO:0001510 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA methylation | SoyBase | N/A | ISS |
| GO:0006412 | GO-bp | Annotation by Michelle Graham. GO Biological Process: translation | SoyBase | N/A | ISS |
| GO:0005730 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleolus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005840 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: ribosome | SoyBase | N/A | ISS |
| GO:0015934 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: large ribosomal subunit | SoyBase | N/A | ISS |
| GO:0022625 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosolic large ribosomal subunit | SoyBase | N/A | ISS |
| GO:0003735 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome | SoyBase | N/A | ISS |
| KOG3184 | KOG | 60S ribosomal protein L7 | JGI | ISS | |
| PTHR11524 | Panther | 60S RIBOSOMAL PROTEIN L7 | JGI | ISS | |
| PF00327 | PFAM | Ribosomal protein L30p/L7e | JGI | ISS | |
| PF08079 | PFAM | Ribosomal L30 N-terminal domain | JGI | ISS | |
| UniRef100_G7L2C7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 60S ribosomal protein L7 n=1 Tax=Medicago truncatula RepID=G7L2C7_MEDTR | SoyBase | E_val: 3.00E-121 | ISS |
| UniRef100_I1N8D5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N8D5_SOYBN | SoyBase | E_val: 1.00E-172 | ISS |
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Glyma19g29460 not represented in the dataset |
Glyma19g29460 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g04040 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g116600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g29460.2 sequence type=transcript gene model=Glyma19g29460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTAGATTTAAAAATACTTAGGCCCAGTGGATCTATGATGAGCCCAACGAAAAACAACCAATATTTTTAAAAAAATACGTGAGAATAAAAAAACGTAGCAGTATATAACCTCAAAAAGAAAATCAATGCATACTTTAGGGCTGCAGGTTCGTGCTTTCCCGCCGCCGCTATACTGCCACCGTCTCCGCCAGCGATGGCAGAAGATGATTCAAAGCCTCTGAACTACATCTCCGAAGTCATACTCAAGAAGAGGAAAAGCACCGAAGCATGGGCGTTAAGGAAAAAAGAACAGTTCCAGCAAAAGAAATTCCAATCCATCAGAAAGCCCGAGGATTTCATCCACGAGTATCGCAACAAGGTAACTAACTCACTCACTTCTCATCACATCGTAACTCGTTTGCGATTAATCGCTAAACCTAAAAAGCGTTTGATGTACCAACGGGATTGGGTCTAGCGGAAAGGGTTAGTCTCCCACAACAGGAAAGGTTCGAATCCCGCTGGAAGAGGTGCCCACATCTAGTGTCCGACCGTGCCTCGAACAGAATTGCCTCCTTTGGAGGAAACCTGAAGTGGACCTTATAAGAATGAAGCGGAGGGTGAAGAGGAAAGTGCCTGAAGCTAACTCCAACACTATGATAATCATTCGGATACAGGGGAAAAAAGACATGCATCCTAGGACTAGGAAGGTGTTGTACAGCTTGGGGTTGAGGAGAAGGTTCAGTGCTGTGTTTGTGAAGCCAAGTGAGGGAATAATGGCCAAGCTGCAGAGGGTGGAACCATATGTCACCTATGGATATCCTAATCTTAAAAGCATAAAGGAGCTAATTTACAAAAAAGGACATGCAAGGATGGAACAGCGAAAAGTTCCCTTGACGGATAATAACATTATTGAGCAGGAATTAGGAAAGTTCGGTATTGTATGCATAGAAGACATGGTTCATCAGATTTATAATGCTGGTCCACACTTTAAGGAAGTTGCCAGATTTATGTGGCCCTTTGAGCTGAACAAGCCAGCTGAAGGATTGAAAGGATCAAAAACCATATTCAAGGAAGGTGGAGACACAGGGAACCGTGAGGATCTCATCAATGAACTAATCAATAAAATGAATTAGTGGCCTTTTGTAGTATCAAAATTTTGATGTTTACTATGTCCATTGGATGATCCTAGGTGCAATATCTCATTTTTGAAGTAATCAATTTATTACCTAGAGAAACATTGCCACAGGTTCTTGTTATAGTTGAGTTTTAAGTGTGTATTTATCTTTACAGTCTTCATTTACTTATTGAATTCCATTAGGCATTGGAATGGGGTGGGGTGGAGAAGAAAGGGACGGGCATGGTGTGCTGTGGGGCTTGAATCTGAATTCTCAATATATTTTTAATGTCATGAACGATGATTCAAGTCCGAATGTGATTTTCATTAAGGTGGACAGAAATGGAATATCTGAATATATGAAGAACATTATTGTTGAAGGATCTTAGCCTTGTTTGTTTGTGAGGTTCAATTACGGATTTGAAACTTTAATTTATCTCAGAATCTTAAATATGTTGTATATTTATTGACTTAATCTGTGCTCATCACTCACATTCGCAAGCTCTGTTAAATAATGACAAACTCAGTTACAATCGAAAATTTGTTCTATTTTAGCTGTTTGATTC
>Glyma19g29460.1 sequence type=CDS gene model=Glyma19g29460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGAAGATGATTCAAAGCCTCTGAACTACATCTCCGAAGTCATACTCAAGAAGAGGAAAAGCACCGAAGCATGGGCGTTAAGGAAAAAAGAACAGTTCCAGCAAAAGAAATTCCAATCCATCAGAAAGCCCGAGGATTTCATCCACGAGTATCGCAACAAGGAAGTGGACCTTATAAGAATGAAGCGGAGGGTGAAGAGGAAAGTGCCTGAAGCTAACTCCAACACTATGATAATCATTCGGATACAGGGGAAAAAAGACATGCATCCTAGGACTAGGAAGGTGTTGTACAGCTTGGGGTTGAGGAGAAGGTTCAGTGCTGTGTTTGTGAAGCCAAGTGAGGGAATAATGGCCAAGCTGCAGAGGGTGGAACCATATGTCACCTATGGATATCCTAATCTTAAAAGCATAAAGGAGCTAATTTACAAAAAAGGACATGCAAGGATGGAACAGCGAAAAGTTCCCTTGACGGATAATAACATTATTGAGCAGGAATTAGGAAAGTTCGGTATTGTATGCATAGAAGACATGGTTCATCAGATTTATAATGCTGGTCCACACTTTAAGGAAGTTGCCAGATTTATGTGGCCCTTTGAGCTGAACAAGCCAGCTGAAGGATTGAAAGGATCAAAAACCATATTCAAGGAAGGTGGAGACACAGGGAACCGTGAGGATCTCATCAATGAACTAATCAATAAAATGAATTAG >Glyma19g29460.2 sequence type=CDS gene model=Glyma19g29460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGCGGAGGGTGAAGAGGAAAGTGCCTGAAGCTAACTCCAACACTATGATAATCATTCGGATACAGGGGAAAAAAGACATGCATCCTAGGACTAGGAAGGTGTTGTACAGCTTGGGGTTGAGGAGAAGGTTCAGTGCTGTGTTTGTGAAGCCAAGTGAGGGAATAATGGCCAAGCTGCAGAGGGTGGAACCATATGTCACCTATGGATATCCTAATCTTAAAAGCATAAAGGAGCTAATTTACAAAAAAGGACATGCAAGGATGGAACAGCGAAAAGTTCCCTTGACGGATAATAACATTATTGAGCAGGAATTAGGAAAGTTCGGTATTGTATGCATAGAAGACATGGTTCATCAGATTTATAATGCTGGTCCACACTTTAAGGAAGTTGCCAGATTTATGTGGCCCTTTGAGCTGAACAAGCCAGCTGAAGGATTGAAAGGATCAAAAACCATATTCAAGGAAGGTGGAGACACAGGGAACCGTGAGGATCTCATCAATGAACTAATCAATAAAATGAATTAG
>Glyma19g29460.1 sequence type=predicted peptide gene model=Glyma19g29460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAEDDSKPLNYISEVILKKRKSTEAWALRKKEQFQQKKFQSIRKPEDFIHEYRNKEVDLIRMKRRVKRKVPEANSNTMIIIRIQGKKDMHPRTRKVLYSLGLRRRFSAVFVKPSEGIMAKLQRVEPYVTYGYPNLKSIKELIYKKGHARMEQRKVPLTDNNIIEQELGKFGIVCIEDMVHQIYNAGPHFKEVARFMWPFELNKPAEGLKGSKTIFKEGGDTGNREDLINELINKMN* >Glyma19g29460.2 sequence type=predicted peptide gene model=Glyma19g29460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKRRVKRKVPEANSNTMIIIRIQGKKDMHPRTRKVLYSLGLRRRFSAVFVKPSEGIMAKLQRVEPYVTYGYPNLKSIKELIYKKGHARMEQRKVPLTDNNIIEQELGKFGIVCIEDMVHQIYNAGPHFKEVARFMWPFELNKPAEGLKGSKTIFKEGGDTGNREDLINELINKMN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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