Report for Sequence Feature Glyma19g29450
Feature Type: gene_model
Chromosome: Gm19
Start: 37011495
stop: 37019380
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g29450
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G58030 AT
Annotation by Michelle Graham. TAIR10: cationic amino acid transporter 2 | chr1:21464185-21468141 REVERSE LENGTH=635
SoyBase E_val: 0 ISS
GO:0003333 GO-bp
Annotation by Michelle Graham. GO Biological Process: amino acid transmembrane transport
SoyBase N/A ISS
GO:0006635 GO-bp
Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation
SoyBase N/A ISS
GO:0006810 GO-bp
Annotation by Michelle Graham. GO Biological Process: transport
SoyBase N/A ISS
GO:0016558 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix
SoyBase N/A ISS
GO:0048573 GO-bp
Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering
SoyBase N/A ISS
GO:0055085 GO-bp
Annotation by Michelle Graham. GO Biological Process: transmembrane transport
SoyBase N/A ISS
GO:0005773 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: vacuole
SoyBase N/A ISS
GO:0005774 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane
SoyBase N/A ISS
GO:0009705 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole membrane
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0015171 GO-mf
Annotation by Michelle Graham. GO Molecular Function: amino acid transmembrane transporter activity
SoyBase N/A ISS
KOG1286
KOG
Amino acid transporters
JGI ISS
PTHR11785 Panther
AMINO ACID TRANSPORTER
JGI ISS
PTHR11785:SF53 Panther
TRYPTOPHAN PERMEASE
JGI ISS
PF00324 PFAM
Amino acid permease
JGI ISS
UniRef100_G7L1J3 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: CCP n=1 Tax=Medicago truncatula RepID=G7L1J3_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1N8D4 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N8D4_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g29450
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma19g29450 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g116500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g29450
Coding sequences of Glyma19g29450
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g29450.1 sequence type=CDS gene model=Glyma19g29450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGTGTTTCGGTTGATTCACCGTCACAAAAGGGTTCATGGGATTTCTTGAAGTTTTTAACTAGGAGGAAGCAGGTTGATTCTCCACGTAGGAACTCTCAGCCTCTGCTTGCCAAGGAGTTAACTGTGCTTCATCTCATTGCAGTTGGTGTTGGTTCAACAATTGGTGCTGGAGTGTATGTGCTGGTGGGAGCGGTTGCACGGGAGCATGCAGGACCGGCTTTGGCCATTTCTTTTCTGATTGCTGGATTAGCAGCTGGTCTCTCTGCATTTTGCTATGCAGAGTTGGCTAGTCGCTGCCCTTCTGCTGGAAGTGCATACCACTATACATACATTTGTCTTGGGGAAGGTGTTGCTTGGTTGATTGGCTGGTCTTTGTTATTGGAATATACAATTGGTAGTGCTGCAGTTGCTCGTGGCGTGACCCCCAATTTGGCTGCACTTTTTGGTGGTGCGGACAATTTACCCATATTTTTGGCCCGACAGCATATTCGTGGAATAGATATTGTTGTGGACCCATGTGCAGCAATCCTGGTATTACTTGTTACTGGACTCTTATGCGTGGGGATCAAGGAGAGTACAGTGGTACAAGGCATAGTGACAGCAGTGAATGTATGTGCATTGCTTTTTGTTATAGCAGCTGGTGGTTACTTGGGATTCAAGTCTGGATGGGTTGGATATGAACTTCCAATAGGATTTTTCCCCTTTGGGATTAATGGGATGCTGGCTGGTTCTGCTACAGTATTCTTTGCATATATTGGTTTTGATGCAGTTGCCAGTACTGCTGAAGAGGTTAAAAATCCTCAACGAGATTTACCGCTTGGTATTGGTGGTGCATTGTTTATTTGTTGTGGGATATATATGATGGTGTCCATTGTTGTAGTTGGTTTAGTACCTTATTATGCAATTGATCCAGATACCCCAATATCATCTGCATTTGCTAATCAAGGGATGGAATGGGCAGCTTACATTATAAATGCTGGTGCTTTCACAGCTCTCTGCTCAGCATTGTTGGGAGGGATACTTCCCCAGCCACGAATTCTGATGTCTATGGCAAGGGATGGGCTTCTGCCACCTTTTTTTTGTGATATAAATAAGCAGACTCAGGTTCCCGTTAAGGGCACAATAGCTACTGGCGTTGTGGCTTCATTCTTGGCTTTTTCTATGGAAGTCTCTCAACTAGCAGGAATGGTTAGTGTGGGTACGCTTTTAGCATTCACCATGGTGGCAATTTCTGTGTTGATCCTAAGATATATCCCTCCAGACGAAGTCCCATTGCCTCCATCTCTCCAGGATTCAATTGCTTCAGTGTTAAAGCGGTACAGATTGAGCAATGCAGAGACAAATGTGGAATATGCAGATGCAAATGTTGTTTCTTCTGAGTACAGAAAACCTTTAATTATTAAGGAGGATGTTTCAATTGATTTTCCTAAACATCTTGCTGTAGGAAACCATCTAAATGAAGGTGATAAGCGAAGAGTTGTTGGGTGGATCATAGCATTCATATGCTTAGGGGAGTTTGTCCTTATATATGCAACTTCAGATTTTACTCTTCTTAGTTCTGTTCGCTTCGCATTATGTGGAATTGGCGGTGCTACTCTTCTGTGTGGTTTTGTTTTACTGACCTGTATAGATCAAGATGATGCAAGACATGACTTTGGGCACTCTGGAGGTTTCATTTGCCCATTTGTGCCACTGCTTCCCATAGCTTGCATTCTCATCAATTCCTACTTACTAGTTAATCTTGGAGATGGCACATGGTTCCGTGTTTCTATATGGCTGGCAACAGGACTACTAGTTTATGTGTTCTATGGCCGAACCCATAGCTCTCTAAAGGATGCAATTTATGTGCCAGCAAAGCAAGTGGATGAAATTTACCAGAATTACAGAAGCTGTCTTGCTTAA
Predicted protein sequences of Glyma19g29450
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g29450.1 sequence type=predicted peptide gene model=Glyma19g29450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGVSVDSPSQKGSWDFLKFLTRRKQVDSPRRNSQPLLAKELTVLHLIAVGVGSTIGAGVYVLVGAVAREHAGPALAISFLIAGLAAGLSAFCYAELASRCPSAGSAYHYTYICLGEGVAWLIGWSLLLEYTIGSAAVARGVTPNLAALFGGADNLPIFLARQHIRGIDIVVDPCAAILVLLVTGLLCVGIKESTVVQGIVTAVNVCALLFVIAAGGYLGFKSGWVGYELPIGFFPFGINGMLAGSATVFFAYIGFDAVASTAEEVKNPQRDLPLGIGGALFICCGIYMMVSIVVVGLVPYYAIDPDTPISSAFANQGMEWAAYIINAGAFTALCSALLGGILPQPRILMSMARDGLLPPFFCDINKQTQVPVKGTIATGVVASFLAFSMEVSQLAGMVSVGTLLAFTMVAISVLILRYIPPDEVPLPPSLQDSIASVLKRYRLSNAETNVEYADANVVSSEYRKPLIIKEDVSIDFPKHLAVGNHLNEGDKRRVVGWIIAFICLGEFVLIYATSDFTLLSSVRFALCGIGGATLLCGFVLLTCIDQDDARHDFGHSGGFICPFVPLLPIACILINSYLLVNLGDGTWFRVSIWLATGLLVYVFYGRTHSSLKDAIYVPAKQVDEIYQNYRSCLA*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
