SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G58030 | AT | Annotation by Michelle Graham. TAIR10: cationic amino acid transporter 2 | chr1:21464185-21468141 REVERSE LENGTH=635 | SoyBase | E_val: 0 | ISS |
| GO:0003333 | GO-bp | Annotation by Michelle Graham. GO Biological Process: amino acid transmembrane transport | SoyBase | N/A | ISS |
| GO:0006635 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation | SoyBase | N/A | ISS |
| GO:0006810 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transport | SoyBase | N/A | ISS |
| GO:0016558 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix | SoyBase | N/A | ISS |
| GO:0048573 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering | SoyBase | N/A | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0009705 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0015171 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: amino acid transmembrane transporter activity | SoyBase | N/A | ISS |
| KOG1286 | KOG | Amino acid transporters | JGI | ISS | |
| PTHR11785 | Panther | AMINO ACID TRANSPORTER | JGI | ISS | |
| PTHR11785:SF53 | Panther | TRYPTOPHAN PERMEASE | JGI | ISS | |
| PF00324 | PFAM | Amino acid permease | JGI | ISS | |
| UniRef100_Q2HVB3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Amino acid/polyamine transporter I n=2 Tax=Medicago truncatula RepID=Q2HVB3_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233E313 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E313 related cluster n=1 Tax=unknown RepID=UPI000233E313 | SoyBase | E_val: 0 | ISS |
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Glyma19g29440 not represented in the dataset |
Glyma19g29440 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g04050 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g116400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g29440.1 sequence type=CDS gene model=Glyma19g29440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATTGTGGAGGACGAAAATTGTGGTGTTGGTTCTGGGGGAGGAGGAAGATGGTTGCGGGGTTTTGGAAGCTTGATTAGGAGGAAGCAAGTTGATTCTGTTCATGTCAGGAGACATGGTCAATTGGCTAGGAAGTTGTCAGCTGTTGATCTCGTTGGAATTGGGGTTGGAGCTACCATAGGAGCTGGAGTGTATATTCTCATTGGAACAGTTGCTAGAGAGCAAGCAGGACCAGCACTTGTGATATCACTTCTCATTGCTGGAATAGCTGCTGGACTGTCAGCTTTTTGCTATGCTGAGCTTGCATGTCGGTGTCCGTCTGCGGGGAGTGCTTATCATTATACATACATATGCATTGGAGAAGGGATTGCTTGGTTGGTCGGTTGGTCTCTGATTCTAGAATATACAATTGGTGCTTCGGCTGTTGCTCGTGGCATAACCCCAAATCTGGCCTTGTTTTTCGGTGGAGAGGACAACCTACCTTCATTTTTGGCTCGACATACCTTACCAGGTCTTGAAATTGTGGTTGATCCATGTGCAGCTGCATTAATTCTTCTTGTTACCCTACTCCTGTGCCTTGGAATCAAGGAGAGTTCAATGGCACAATCCATTGTGACAACAGTAAACGTCTGTGTCATGCTTTTCATCATTTTAGTTGGTGGATATCTAGGCTTCAAGTCTGGATGGGTTGGATATGAACTCTCCAGCGGGTATTTTCCTTATGGAGTGAATGGGATGTTTGCTGGGTCTGCGATAGTTTTCTTTTCATACATTGGTTTTGATTCAGTGAGCAGTACAGCTGAGGAGGTAAAAAATCCTCAACGAGACTTGCCAATTGGCATATCAACCGCGTTAACTATATGTTGCGTTCTGTATATGCTTGTAGCAGCAGTTATTGTTGGCTTAGTACCATATTATGAGTTGAACCCTGATACCCCAATCTCCTCAGCATTTTCTAGCTATGGGATGCAATGGGCAGTGTATATAATAACAACTGGAGCTGTTACTGCTCTTTTTGCCAGTTTGCTGGGTTCTGTGCTTCCTCAGCCACGCGTCTTTATGGCAATGGCTAGGGATGGTTTATTGCCTCATTTCTTCTCAGACATCCATAAAGGCACACAGATTCCTTTGAAAAGCACTATTGTCACTGGTGTCTTTGCAGCTACTCTTGCATTCTTTATGGACGTTTCTCAATTAGCAGGGATGGTTAGTGTGGGAACACTGCTTGCATTTACCACTGTTGCAGTTTCAGTTTTGATAATCAGATATGTGCCACCTGATGAGGTACCCATTCCATCTTCACTTCTAACATCTGCTGATCCATTATTGAGGCAATCTAGTGGTGATATTGGGGAAGATGGGTCCGTAAGTCCAGTAGATCCTGCTAGTTATTGTGAGAATAGTCACCTAGAGGCTCTGCTTGGGCATCCTTTAATCATAAAAGAAGTGACCAAAGATGAACAGAATGAGAAAGCTAGGCGGAAACTTGCTTCATGGACCATAGCCCTTCTATGTATAGGCATTCTCATAGTTACCAGTGCGGCTTCAGCTGACTGGTGTCCCAGGATTTTGCGCTTAACGTTGTGCGGAATGGGTGGTATTCTTCTTTTGTGCAGTACAATTGTACTGGCCTGCGTAAAGCAAGATGATACTAGGCACAGCTTTGGACACTCAGGAGGTTTTGCCTGCCCATTTGTTCCATTCTTACCTGCTGCATGTATTCTTATAAACACCTACTTACTAATCGATCTTGGAGTTGCTACATGGCTGCGAGTTTCGGTATGGATGTTGATAGGAGTACTTGTATACTTGTTCTATGGCCGCACTCACAGCTCACTGTTGCATGCAATCTATGTTCCCTCAGCATATGCTGATGAAATCCATCGATCTCAAGCAAGTCATCTTGCCTAG
>Glyma19g29440.1 sequence type=predicted peptide gene model=Glyma19g29440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIVEDENCGVGSGGGGRWLRGFGSLIRRKQVDSVHVRRHGQLARKLSAVDLVGIGVGATIGAGVYILIGTVAREQAGPALVISLLIAGIAAGLSAFCYAELACRCPSAGSAYHYTYICIGEGIAWLVGWSLILEYTIGASAVARGITPNLALFFGGEDNLPSFLARHTLPGLEIVVDPCAAALILLVTLLLCLGIKESSMAQSIVTTVNVCVMLFIILVGGYLGFKSGWVGYELSSGYFPYGVNGMFAGSAIVFFSYIGFDSVSSTAEEVKNPQRDLPIGISTALTICCVLYMLVAAVIVGLVPYYELNPDTPISSAFSSYGMQWAVYIITTGAVTALFASLLGSVLPQPRVFMAMARDGLLPHFFSDIHKGTQIPLKSTIVTGVFAATLAFFMDVSQLAGMVSVGTLLAFTTVAVSVLIIRYVPPDEVPIPSSLLTSADPLLRQSSGDIGEDGSVSPVDPASYCENSHLEALLGHPLIIKEVTKDEQNEKARRKLASWTIALLCIGILIVTSAASADWCPRILRLTLCGMGGILLLCSTIVLACVKQDDTRHSFGHSGGFACPFVPFLPAACILINTYLLIDLGVATWLRVSVWMLIGVLVYLFYGRTHSSLLHAIYVPSAYADEIHRSQASHLA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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