SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G03740 | AT | Annotation by Michelle Graham. TAIR10: BTB-POZ and MATH domain 4 | chr3:937106-939807 REVERSE LENGTH=465 | SoyBase | E_val: 0 | ISS |
| GO:0006970 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to osmotic stress | SoyBase | N/A | ISS |
| GO:0042631 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to water deprivation | SoyBase | N/A | ISS |
| GO:0071472 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to salt stress | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG1987 | KOG | Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains | JGI | ISS | |
| PTHR24411 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24411:SF177 | Panther | JGI | ISS | ||
| PF00651 | PFAM | BTB/POZ domain | JGI | ISS | |
| PF00917 | PFAM | MATH domain | JGI | ISS | |
| UniRef100_I1N8D1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N8D1_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q2HVB4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: BTB/POZ; MATH n=1 Tax=Medicago truncatula RepID=Q2HVB4_MEDTR | SoyBase | E_val: 0 | ISS |
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Glyma19g29420 not represented in the dataset |
Glyma19g29420 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g04060 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g116300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g29420.4 sequence type=transcript gene model=Glyma19g29420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAAGAATTGTGAGATCAAGTTTCGAATTAAGTTGAAATTGGTTCCGTTCATCATCGATCTATCCCGTGCCCGTGGAACATTGAAGAATCAAGATCAGATCAAACTAATAAAAGAAAAGAAAAGAAAATATCTTCAAATCATTAGTTTCGTTTCATTTCATTCCTCCTCTTTCTCTATACTATTTACGTTTCAAGTAAAAAACAAAAAAAAGTTGAAGGAAAGCCAAAACTAGATTAGATTAGAACCAAACCAACAACAAATCATCTATCTATCTCGCGCAGATCCATTTCCCTTCACTTTCCCGGGAGAAAAAGAAACCTCCGTTTCGCGAGAAACCCCGTCCGTACATGGTCTGTTCACGCGGATCGGGTTGATTGACCACCACCACCACCACCACCACCACCATCGCGCGTGAGATGCACACCGCGAGCAGGAGCAACGGCGGCGGCGTGCTGGCGTCGCGGACGAGTTCGCGGTCGGTGACGGAGACGGTGAACGGGTCGCACAAGTTCGTGATAAAGGGATACTCCCTGGCGAAGGGGATCGGAGTGGGGAAACACATCGCCAGCGAGACGTTCACGGTGGGAGGGTACCAGTGGGCGATATACTTCTACCCGGACGGCAAGAACCCCGAGGACAACTCCGCCTACGTCTCCGTCTTCATCGCCCTCGCCTCCGAGGGCACCGACGTCCGCGCTCTGTTCGAGCTCACGCTGCTCGACCAGAGCGGGAATGGTAAGCACAAGGTTCACAGCCACTTCGATCGCTCGCTCGAGAGCGGGCCCTACACTCTCAAGTATCGCGGCAGCATGTGGGGGTATAAGAGATTTTTCAAACGGGCTCAACTTGAGGCGTCAACTTTCCTCAAAGACGACTGCTTGAAGATAAACTGCACTGTTGGTGTTGTGGTGTCGTCCATTGATTGTTCCAAGTTAAACACAATACAGGTTCCCGAGTCTGATATTGGGGCACATTTCGGGATGCTGTTAGAGAATGAGGAGGGATCAGATGTTACTTTCTCTGTCGGTGGAGAAAGGTTTCATGCACATAAGCTTGTTTTGGCAGCTCGGTCAACTGCATTTGAAACTGAGTTTTTCAATGGGATGGAGGAGGATGATCATGACATAGTTGTTACTGACATGGAACCAAAGGTTTTCAAGGCTTTGCTTCATTTTATTTATAGAGACACTCTAATAGATGATGAAGAGCTCTTTATGTCACGTTCATCATTCTTGCCTTCGGTTTCTGAATCATTTGCAGCAAAGTTGTTAGCTGCTGCAGAAAAGTATGGTTTGCCAAGACTTAAGCTGATGTGTGAGTCTGTACTTTGCAAAGACATCTCTATAGATTCTGTTGCCTATATTCTGGCTCTTGCTGATCGTTATCGTGCAACAGAATTGAAGTCTGTCTGTCTACAATTTTCTGCTGAAAACCTTGTCGCTGTGATGCAATCTGATGGTTTTGAGTATCTTAAGGAAAATTGTCCCTTGCTGCAATCAGAACTGCTAAAGACTGTGGCTGGATGCGAGGAGGAATTTAGTGGAGAAGGAAAGTGTCGAAGTGTGTGGGCTCAATTTTCTGATGGTGGTGACACCAATGATAGGAGTGTAAGACAACAAACCTGGGAAAATGGTGTTGAAAGAAGTCAAAGCTTATGGGTTCACCTTTCGGATGGTGTTAACAACAATGATAGGAGTCCAGGGCAAGAAGCCTGACAAGGTAAGGGATTCCGTTGGGAGAAGTTAACGTGTCATTTGTACAGGACCAACCTGCAGGGATTCCTCCATTGCATGCAGTGTTGTTTTTCTTTTCTTTTAACGGGGGATAGTGGTTGACTGGTTGCGAATAGTAGATTCATCTTGTAACGTTAGTGATGTATCTTTTAACATCAATGAATGCTAGCAAGTTAACAAAATGAGATGAAGTGACAAAACAAAAGTTCTTGGTTACCTTTGGTTGTATCTATAGATCTTTTCTCTTTTAGGGTTGGAGGTTGTACACCCCGTTTGCTGAACACAGGACAACTCATTTATGATTGCTGTAGCTTTACACCGTGGGAATCTTCATCCTTGTGAATTGTGAAACCTATGGATCAAATTAGACTTGTATATAGCCATTAAACCATCAATATAATGTGGCTTTATCTACCCAATAGTTAAACTATAATTGTATGAGTTTAGTTATTATTATCAACCTAATAGTTATTATA
>Glyma19g29420.3 sequence type=CDS gene model=Glyma19g29420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCACACCGCGAGCAGGAGCAACGGCGGCGGCGTGCTGGCGTCGCGGACGAGTTCGCGGTCGGTGACGGAGACGGTGAACGGGTCGCACAAGTTCGTGATAAAGGGATACTCCCTGGCGAAGGGGATCGGAGTGGGGAAACACATCGCCAGCGAGACGTTCACGGTGGGAGGGTACCAGTGGGCGATATACTTCTACCCGGACGGCAAGAACCCCGAGGACAACTCCGCCTACGTCTCCGTCTTCATCGCCCTCGCCTCCGAGGGCACCGACGTCCGCGCTCTGTTCGAGCTCACGCTGCTCGACCAGAGCGGGAATGGTAAGCACAAGGTTCACAGCCACTTCGATCGCTCGCTCGAGAGCGGGCCCTACACTCTCAAGTATCGCGGCAGCATGTGGGGGTATAAGAGATTTTTCAAACGGGCTCAACTTGAGGCGTCAACTTTCCTCAAAGACGACTGCTTGAAGATAAACTGCACTGTTGGTGTTGTGGTGTCGTCCATTGATTGTTCCAAGTTAAACACAATACAGGTTCCCGAGTCTGATATTGGGGCACATTTCGGGATGCTGTTAGAGAATGAGGAGGGATCAGATGTTACTTTCTCTGTCGGTGGAGAAAGGTTTCATGCACATAAGCTTGTTTTGGCAGCTCGGTCAACTGCATTTGAAACTGAGTTTTTCAATGGGATGGAGGAGGATGATCATGACATAGTTGTTACTGACATGGAACCAAAGGTTTTCAAGGCTTTGCTTCATTTTATTTATAGAGACACTCTAATAGATGATGAAGAGCTCTTTATGTCACGTTCATCATTCTTGCCTTCGGTTTCTGAATCATTTGCAGCAAAGTTGTTAGCTGCTGCAGAAAAGTATGGTTTGCCAAGACTTAAGCTGATGTGTGAGTCTGTACTTTGCAAAGACATCTCTATAGATTCTGTTGCCTATATTCTGGCTCTTGCTGATCGTTATCGTGCAACAGAATTGAAGTCTGTCTGTCTACAATTTTCTGCTGAAAACCTTGTCGCTGTGATGCAATCTGATGGTTTTGAGTATCTTAAGGAAAATTGTCCCTTGCTGCAATCAGAACTGCTAAAGACTGTGGCTGGATGCGAGGAGGAATTTAGTGGAGAAGGAAAGTGTCGAAGTGTGTGGGCTCAATTTTCTGATGGTGGTGACACCAATGATAGGAGTGTAAGACAACAAACCTGGGAAAATGGTGTTGAAAGAAGTCAAAGCTTATGGGTTCACCTTTCGGATGGTGTTAACAACAATGATAGGAGTCCAGGGCAAGAAGCCTGA >Glyma19g29420.4 sequence type=CDS gene model=Glyma19g29420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCACACCGCGAGCAGGAGCAACGGCGGCGGCGTGCTGGCGTCGCGGACGAGTTCGCGGTCGGTGACGGAGACGGTGAACGGGTCGCACAAGTTCGTGATAAAGGGATACTCCCTGGCGAAGGGGATCGGAGTGGGGAAACACATCGCCAGCGAGACGTTCACGGTGGGAGGGTACCAGTGGGCGATATACTTCTACCCGGACGGCAAGAACCCCGAGGACAACTCCGCCTACGTCTCCGTCTTCATCGCCCTCGCCTCCGAGGGCACCGACGTCCGCGCTCTGTTCGAGCTCACGCTGCTCGACCAGAGCGGGAATGGTAAGCACAAGGTTCACAGCCACTTCGATCGCTCGCTCGAGAGCGGGCCCTACACTCTCAAGTATCGCGGCAGCATGTGGGGGTATAAGAGATTTTTCAAACGGGCTCAACTTGAGGCGTCAACTTTCCTCAAAGACGACTGCTTGAAGATAAACTGCACTGTTGGTGTTGTGGTGTCGTCCATTGATTGTTCCAAGTTAAACACAATACAGGTTCCCGAGTCTGATATTGGGGCACATTTCGGGATGCTGTTAGAGAATGAGGAGGGATCAGATGTTACTTTCTCTGTCGGTGGAGAAAGGTTTCATGCACATAAGCTTGTTTTGGCAGCTCGGTCAACTGCATTTGAAACTGAGTTTTTCAATGGGATGGAGGAGGATGATCATGACATAGTTGTTACTGACATGGAACCAAAGGTTTTCAAGGCTTTGCTTCATTTTATTTATAGAGACACTCTAATAGATGATGAAGAGCTCTTTATGTCACGTTCATCATTCTTGCCTTCGGTTTCTGAATCATTTGCAGCAAAGTTGTTAGCTGCTGCAGAAAAGTATGGTTTGCCAAGACTTAAGCTGATGTGTGAGTCTGTACTTTGCAAAGACATCTCTATAGATTCTGTTGCCTATATTCTGGCTCTTGCTGATCGTTATCGTGCAACAGAATTGAAGTCTGTCTGTCTACAATTTTCTGCTGAAAACCTTGTCGCTGTGATGCAATCTGATGGTTTTGAGTATCTTAAGGAAAATTGTCCCTTGCTGCAATCAGAACTGCTAAAGACTGTGGCTGGATGCGAGGAGGAATTTAGTGGAGAAGGAAAGTGTCGAAGTGTGTGGGCTCAATTTTCTGATGGTGGTGACACCAATGATAGGAGTGTAAGACAACAAACCTGGGAAAATGGTGTTGAAAGAAGTCAAAGCTTATGGGTTCACCTTTCGGATGGTGTTAACAACAATGATAGGAGTCCAGGGCAAGAAGCCTGA
>Glyma19g29420.3 sequence type=predicted peptide gene model=Glyma19g29420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MHTASRSNGGGVLASRTSSRSVTETVNGSHKFVIKGYSLAKGIGVGKHIASETFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALASEGTDVRALFELTLLDQSGNGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFKRAQLEASTFLKDDCLKINCTVGVVVSSIDCSKLNTIQVPESDIGAHFGMLLENEEGSDVTFSVGGERFHAHKLVLAARSTAFETEFFNGMEEDDHDIVVTDMEPKVFKALLHFIYRDTLIDDEELFMSRSSFLPSVSESFAAKLLAAAEKYGLPRLKLMCESVLCKDISIDSVAYILALADRYRATELKSVCLQFSAENLVAVMQSDGFEYLKENCPLLQSELLKTVAGCEEEFSGEGKCRSVWAQFSDGGDTNDRSVRQQTWENGVERSQSLWVHLSDGVNNNDRSPGQEA* >Glyma19g29420.4 sequence type=predicted peptide gene model=Glyma19g29420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MHTASRSNGGGVLASRTSSRSVTETVNGSHKFVIKGYSLAKGIGVGKHIASETFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALASEGTDVRALFELTLLDQSGNGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFKRAQLEASTFLKDDCLKINCTVGVVVSSIDCSKLNTIQVPESDIGAHFGMLLENEEGSDVTFSVGGERFHAHKLVLAARSTAFETEFFNGMEEDDHDIVVTDMEPKVFKALLHFIYRDTLIDDEELFMSRSSFLPSVSESFAAKLLAAAEKYGLPRLKLMCESVLCKDISIDSVAYILALADRYRATELKSVCLQFSAENLVAVMQSDGFEYLKENCPLLQSELLKTVAGCEEEFSGEGKCRSVWAQFSDGGDTNDRSVRQQTWENGVERSQSLWVHLSDGVNNNDRSPGQEA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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