Glyma19g29401 - SoyBase

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Report for Sequence Feature Glyma19g29401

Feature Type:	gene_model
Chromosome:	Gm19
Start:	36970856
stop:	36976460
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g29401

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G28760	AT	Annotation by Michelle Graham. TAIR10: Uncharacterized conserved protein (DUF2215) \| chr1:10103158-10104588 FORWARD LENGTH=476	SoyBase	E_val: 5.00E-151	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
PF10225	PFAM	Uncharacterized conserved protein (DUF2215)	JGI		ISS
UniRef100_Q2HVB6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein F1K23.6-, putative n=1 Tax=Medicago truncatula RepID=Q2HVB6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E310	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E310 related cluster n=1 Tax=unknown RepID=UPI000233E310	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g29401

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g29401 not represented in the dataset	Glyma19g29401 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g29401

Paralog	Evidence	Comments
Glyma16g04100	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g29401 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g116100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g29401

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g29401

Limit To All Plant Sequences

>Glyma19g29401.1   sequence type=CDS   gene model=Glyma19g29401   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGATCCTTCTCCTCTTCCCTCTTTCTCCTTCTCTTCTTCTTCTCTTCTTCACTCTCCAATCCCCAAAATGCCCCTCTCTCACTCAAAGGTGTTGATATTGAAAGGCCGGTTTTGGAGTTCTCCCCTTCCGTTCTTCCCGGTATTTCGGGTTCTCTAGGTGTTAAGGACGCTTTACGATGCGAGCGTGTTCGGGTTTCGGGCATCTCGAGAGTGAAACTTGGGAGCTACGCTAATTCGTACCATGTTACTTTGGCTCCCTCCGTTTCGATCCCCGAGAAGTTGCATAGCAAAATTCAGGTTTGCTTCCACAGGAATGAAACAGTTGGATGGTGTCAGTGTGAGAAAGATGAGTGGAGGGGGGTGCAGAAGGGGGTCTGGAATGCTGTTATGTCACCTTATGAAACGAGATATGTTGATGTGAGGATCAATGGAGAAATATTGGGTTCTGTTACAGTTGCTATTGAAGAAGATTTTCAGCAATGGCGCCTTGTTTGTCTTGCAGTAGGATTGATACTGTTGTTGTTGGCTCCAACTGTTAGCAGATGGGTTCCGTTTTATTATAGCACTTCAATGGCTATAGGGATCTTTCTTGTCATTATAATCCTTCTTTTTCAGGGCATGAAATTAATGCCAACTGGAAGAAAAAATATCTTCTACCTTACCATATATGGTTCAGTGGTTGGAGCTGGGTCATTCCTTTTGCACCAATTTTCTTTGATCTTAAATTCAATTTTTCAGAGTCTTGGGATGAGTGAAGAGATGCACAATCCAGTTGCTGTTTTTGTAATACTGGGCATCATCTTGGCTGGAGCTGCTTTAGGCTACTTGATCGTTAGGAGGTTTGTTATTTCAAAAGAAGATGGTAGTGTGGATGCTGGGGTTGCTCAGTTTGTGAAATGGGCTATGCGCATTATTGGATCCACTTTCATTTTGCAGAGCACTCTTGATCCTCTTCTAGCAATTGGAGCTTTGATCTCTTGTGGAGCTGCTTGCAAACTTATTTCTGCCATAAAATGGCTTTGTGGATGGTATGAAACTTCAAATGACGACTATTCGCTGCAATGGATGAGAGGAAGACGCGGTCGTGCGGAATTCCTTAGCAAGTCAACCCCTAAAGGGAAACATTGGAGTAGCCCTAAAGGAAAATTGTGGAATAGCCCTAGAAGATCAGCATGGTCTGACTCTCCTGTCAGAGGTGTTGTATCACCATCTTCCGGGATTTCGTCACAATCTTCAGGGACTCAAGCAGGGCAGAATTATTATTCAACTTTCCACAAGACCCGGAACAGAAAGAAGTTCACAAAGCAAGAGTGGGATGAGTTCACAAGAGAATCCACTAAGCAGGCTCTAGCAGAATGGGCAGCTTCTCCAGAATTCACTGATTGGATCGTTGAGCATGCAGACCGGATACAAGTCCTTCCAAGCGAGAGTTCGGATGAGACAATGGGAAGTGAATCGGATTCCACAGATCGAGGAAGTGGAAGAGGATTTGGGCTTTTTAATTGGCAGTGA

Predicted protein sequences of Glyma19g29401

Limit To All Plant Sequences

>Glyma19g29401.1   sequence type=predicted peptide   gene model=Glyma19g29401   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRSFSSSLFLLLFFFSSSLSNPQNAPLSLKGVDIERPVLEFSPSVLPGISGSLGVKDALRCERVRVSGISRVKLGSYANSYHVTLAPSVSIPEKLHSKIQVCFHRNETVGWCQCEKDEWRGVQKGVWNAVMSPYETRYVDVRINGEILGSVTVAIEEDFQQWRLVCLAVGLILLLLAPTVSRWVPFYYSTSMAIGIFLVIIILLFQGMKLMPTGRKNIFYLTIYGSVVGAGSFLLHQFSLILNSIFQSLGMSEEMHNPVAVFVILGIILAGAALGYLIVRRFVISKEDGSVDAGVAQFVKWAMRIIGSTFILQSTLDPLLAIGALISCGAACKLISAIKWLCGWYETSNDDYSLQWMRGRRGRAEFLSKSTPKGKHWSSPKGKLWNSPRRSAWSDSPVRGVVSPSSGISSQSSGTQAGQNYYSTFHKTRNRKKFTKQEWDEFTRESTKQALAEWAASPEFTDWIVEHADRIQVLPSESSDETMGSESDSTDRGSGRGFGLFNWQ*

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