Glyma19g29390 - SoyBase

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Report for Sequence Feature Glyma19g29390

Feature Type:	gene_model
Chromosome:	Gm19
Start:	36954094
stop:	36961212
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g29390

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G35220	AT	Annotation by Michelle Graham. TAIR10: Peptidase M50 family protein \| chr5:13484606-13487546 REVERSE LENGTH=548	SoyBase	E_val: 0	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0009416	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to light stimulus	SoyBase	N/A	ISS
GO:0009630	GO-bp	Annotation by Michelle Graham. GO Biological Process: gravitropism	SoyBase	N/A	ISS
GO:0009658	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast organization	SoyBase	N/A	ISS
GO:0009723	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus	SoyBase	N/A	ISS
GO:0009959	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative gravitropism	SoyBase	N/A	ISS
GO:0010027	GO-bp	Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization	SoyBase	N/A	ISS
GO:0010207	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosystem II assembly	SoyBase	N/A	ISS
GO:0043157	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cation stress	SoyBase	N/A	ISS
GO:0048564	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosystem I assembly	SoyBase	N/A	ISS
GO:0060359	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ammonium ion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0004222	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metalloendopeptidase activity	SoyBase	N/A	ISS
PF02163	PFAM	Peptidase family M50	JGI		ISS
UniRef100_A2Q1L2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Peptidase M50, mammalian sterol-regulatory element binding protein n=1 Tax=Medicago truncatula RepID=A2Q1L2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N8C6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N8C6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g29390

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g29390

Paralog	Evidence	Comments
Glyma16g04110	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g29390 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g116000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g29390

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g29390

Limit To All Plant Sequences

>Glyma19g29390.2   sequence type=transcript   gene model=Glyma19g29390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACATCCAAACCAAAAAAAAAAAAAAACCTTCAACGACATTACAGCGTTTCATCCGAAACCTTCAAACGACGGTCAAAAACACCATCCATCCATGCCATTCTGAAACGCTTTTTGTTTCGCTTGAACGACCGTCGTTTCGTTCCGAAATGGGGACTCTAACGAGTTGCAGCTTCATGCCTCTGAACTCGGAGTTCCGCTCCAACCCGGTTCGCCGCGCCTTCAGGGAGAGGATTCAGTGCCATAAGCTCACGCGCTTGAGGGGCGCCTCCTCCTGCTTCTTCTCACGCGCGCGAGTACCCAAATGGGGCAAGTCGAAGCTCTCCAATTTTGATAGCCTTAGGTGTTTTGCTACTAATAATGACAACAACAGTGACGACGGCGACAAGGACAGTAACAACGTTGGTGCCGCCGGAGAGGAAAGTGGTGGCGACGATTCGAAATCCAACGTTACGACGACGATGCCCGAAGAAGAGAGAGGATTCACTTCGCAGAAATCGACGCCTCCTTCCACTTCTCAGAGGTCGTCTTTGTCATCGCTTGGACCAGCATACAACACTTTTCAAGTTGATTCTTTCAAACTTATTGAGCTCCTTGGGCCTGAGAAGGTTGATCCTGCTGATGTAAAGCTGATTAAGGATAAGCTTTTTGGGTATTCGACCTTCTGGGTGACGAAAGAGGAGCCTTTTGGAGACTTGGGAGAAGGCATTCTTTTCATTGGGAATTTAAGGGGGAAGAGAGAGGATGTTTTTGCCAAACTCCAGAATCAGCTAGTTGAAGTCACGGGTGATAAGTACAACCTTTTTATGGTGGAGGAACCCAATGCGGACAGTCCTGATCCACGCGGTGGGCCACGTGTGAGCTTTGGTTTGCTGCGGAAGGAGGTTTCTGAGCCGGGGCCGATGACGCTTTGGCAATATGTCATTGCATTGCTGTTATTTCTCCTAACTATTGGTTCCTCAGTGGAGCTAGGAATTGCATCTCAGATCAACAGACTTCCTCCAGAAGTTGTGAAATATTTCACAGATCCGGATGCTGTTGAAGCTCCAGATATGGAGCTGCTATTTCCATTTGTTGACTCGGCTTTACCTTTAGCATATGGTGTCTTGGGGGTTCTTCTGTTTCATGAGGTTGGACACTTTCTATCAGCATTTCCTAAACAAGTAAAATTAAGCATACCTTTCTTCATTCCAAACATCACACTTGGCAGCTTTGGTGCTATTACACAGTTTAAATCCATCCTTCCTGATAGAAGTACACAAGTAGACATATCACTTGCGGGTCCCTTTGCTGGTGCTGTATTATCATTTTCGATGTTTGCTGTTGGCCTTCTTCTCTCATCAAATCCAGATATAACAGGAGATTTGGTGCAAGTACCTAGCTTGTTGTTTCAAGGTTCCTTGCTTCTTGGATTGATCAGTAGAGCAACCCTTGGTTATGCAGCAATGCATGCTGAAACAGTTCCAATTCACCCTCTTGTGATTGCAGGCTGGTGTGGCTTAACCATACAAGCTTTTAACATGCTTCCAGTGGGGTGCCTTGATGGTGGAAGAGCAGTGCAGGGTGCTTTTGGAAAAAATGCGCTAGTGGGCTTTGGTTTAACAACGTATACATTGCTTGGATTAGGAGTGGTATATCTGAATTAAACAAAGCATATATATAGTTGTTCAATAACATTGTTAAAGTTCAACCATTATATAATTTAGTTTCAGAGTTATCATGTGTATTTATTATCAGTCTTTTGTTCATATTCCTATTTACTAACACTCTCCCTAGTCCTTTCCTAAAAGAAAATAGGGCATACTTGCACTAATAAAAAAGTTGGAGTCCCTAGTTCCTCATTGTTT

Coding sequences of Glyma19g29390

Limit To All Plant Sequences

>Glyma19g29390.1   sequence type=CDS   gene model=Glyma19g29390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGACTCTAACGAGTTGCAGCTTCATGCCTCTGAACTCGGAGTTCCGCTCCAACCCGGTTCGCCGCGCCTTCAGGGAGAGGATTCAGTGCCATAAGCTCACGCGCTTGAGGGGCGCCTCCTCCTGCTTCTTCTCACGCGCGCGAGTACCCAAATGGGGCAAGTCGAAGCTCTCCAATTTTGATAGCCTTAGGTGTTTTGCTACTAATAATGACAACAACAGTGACGACGGCGACAAGGACAGTAACAACGTTGGTGCCGCCGGAGAGGAAAGTGGTGGCGACGATTCGAAATCCAACGTTACGACGACGATGCCCGAAGAAGAGAGAGGATTCACTTCGCAGAAATCGACGCCTCCTTCCACTTCTCAGAGGTCGTCTTTGTCATCGCTTGGACCAGCATACAACACTTTTCAAGTTGATTCTTTCAAACTTATTGAGCTCCTTGGGCCTGAGAAGGTTGATCCTGCTGATGTAAAGCTGATTAAGGATAAGCTTTTTGGGTATTCGACCTTCTGGGTGACGAAAGAGGAGCCTTTTGGAGACTTGGGAGAAGGCATTCTTTTCATTGGGAATTTAAGGGGGAAGAGAGAGGATGTTTTTGCCAAACTCCAGAATCAGCTAGTTGAAGTCACGGGTGATAAGTACAACCTTTTTATGGTGGAGGAACCCAATGCGGACAGTCCTGATCCACGCGGTGGGCCACGTGTGAGCTTTGGTTTGCTGCGGAAGGAGGTTTCTGAGCCGGGGCCGATGACGCTTTGGCAATATGTCATTGCATTGCTGTTATTTCTCCTAACTATTGGTTCCTCAGTGGAGCTAGGAATTGCATCTCAGATCAACAGACTTCCTCCAGAAGTTGTGAAATATTTCACAGATCCGGATGCTGTTGAAGCTCCAGATATGGAGCTGCTATTTCCATTTGTTGACTCGGCTTTACCTTTAGCATATGGTGTCTTGGGGGTTCTTCTGTTTCATGAGGTTGGACACTTTCTATCAGCATTTCCTAAACAAGTAAAATTAAGCATACCTTTCTTCATTCCAAACATCACACTTGGCAGCTTTGGTGCTATTACACAGTTTAAATCCATCCTTCCTGATAGAAGTACACAAGTAGACATATCACTTGCGGGTCCCTTTGCTGGTGCTGTATTATCATTTTCGATGTTTGCTGTTGGCCTTCTTCTCTCATCAAATCCAGATATAACAGGAGATTTGGTGCAAGTACCTAGCTTGTTGTTTCAAGGTTCCTTGCTTCTTGGATTGATCAGTAGAGCAACCCTTGGTTATGCAGCAATGCATGCTGAAACAGTTCCAATTCACCCTCTTGTGATTGCAGGCTGGTGTGGCTTAACCATACAAGCTTTTAACATGCTTCCAGTGGGGTGCCTTGATGGTGGAAGAGCAGTGCAGGGTGCTTTTGGAAAAAATGCGCTAGTGGGCTTTGGTTTAACAACGTATACATTGCTTGGATTAGGAGTGCTTGGTGGACCTCTTTCACTTCCTTGGGGACTTTATGTTTTGTTATGTCAGAGGGCACCAGAGAAACCATGCTTAAATGATGTGACAGAGGTTGGAACATGGAGAAAGGCACTTGTGGCAATTGCTATTTTTCTTGTTGTCTTGACTCTTGTTCCTGTTGGGGATGAGCTTGCAGAGGAACTGGGTATAGGTCTTGTAACTGCATTTTGA

>Glyma19g29390.2   sequence type=CDS   gene model=Glyma19g29390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGACTCTAACGAGTTGCAGCTTCATGCCTCTGAACTCGGAGTTCCGCTCCAACCCGGTTCGCCGCGCCTTCAGGGAGAGGATTCAGTGCCATAAGCTCACGCGCTTGAGGGGCGCCTCCTCCTGCTTCTTCTCACGCGCGCGAGTACCCAAATGGGGCAAGTCGAAGCTCTCCAATTTTGATAGCCTTAGGTGTTTTGCTACTAATAATGACAACAACAGTGACGACGGCGACAAGGACAGTAACAACGTTGGTGCCGCCGGAGAGGAAAGTGGTGGCGACGATTCGAAATCCAACGTTACGACGACGATGCCCGAAGAAGAGAGAGGATTCACTTCGCAGAAATCGACGCCTCCTTCCACTTCTCAGAGGTCGTCTTTGTCATCGCTTGGACCAGCATACAACACTTTTCAAGTTGATTCTTTCAAACTTATTGAGCTCCTTGGGCCTGAGAAGGTTGATCCTGCTGATGTAAAGCTGATTAAGGATAAGCTTTTTGGGTATTCGACCTTCTGGGTGACGAAAGAGGAGCCTTTTGGAGACTTGGGAGAAGGCATTCTTTTCATTGGGAATTTAAGGGGGAAGAGAGAGGATGTTTTTGCCAAACTCCAGAATCAGCTAGTTGAAGTCACGGGTGATAAGTACAACCTTTTTATGGTGGAGGAACCCAATGCGGACAGTCCTGATCCACGCGGTGGGCCACGTGTGAGCTTTGGTTTGCTGCGGAAGGAGGTTTCTGAGCCGGGGCCGATGACGCTTTGGCAATATGTCATTGCATTGCTGTTATTTCTCCTAACTATTGGTTCCTCAGTGGAGCTAGGAATTGCATCTCAGATCAACAGACTTCCTCCAGAAGTTGTGAAATATTTCACAGATCCGGATGCTGTTGAAGCTCCAGATATGGAGCTGCTATTTCCATTTGTTGACTCGGCTTTACCTTTAGCATATGGTGTCTTGGGGGTTCTTCTGTTTCATGAGGTTGGACACTTTCTATCAGCATTTCCTAAACAAGTAAAATTAAGCATACCTTTCTTCATTCCAAACATCACACTTGGCAGCTTTGGTGCTATTACACAGTTTAAATCCATCCTTCCTGATAGAAGTACACAAGTAGACATATCACTTGCGGGTCCCTTTGCTGGTGCTGTATTATCATTTTCGATGTTTGCTGTTGGCCTTCTTCTCTCATCAAATCCAGATATAACAGGAGATTTGGTGCAAGTACCTAGCTTGTTGTTTCAAGGTTCCTTGCTTCTTGGATTGATCAGTAGAGCAACCCTTGGTTATGCAGCAATGCATGCTGAAACAGTTCCAATTCACCCTCTTGTGATTGCAGGCTGGTGTGGCTTAACCATACAAGCTTTTAACATGCTTCCAGTGGGGTGCCTTGATGGTGGAAGAGCAGTGCAGGGTGCTTTTGGAAAAAATGCGCTAGTGGGCTTTGGTTTAACAACGTATACATTGCTTGGATTAGGAGTGGTATATCTGAATTAA

Predicted protein sequences of Glyma19g29390

Limit To All Plant Sequences

>Glyma19g29390.1   sequence type=predicted peptide   gene model=Glyma19g29390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTLTSCSFMPLNSEFRSNPVRRAFRERIQCHKLTRLRGASSCFFSRARVPKWGKSKLSNFDSLRCFATNNDNNSDDGDKDSNNVGAAGEESGGDDSKSNVTTTMPEEERGFTSQKSTPPSTSQRSSLSSLGPAYNTFQVDSFKLIELLGPEKVDPADVKLIKDKLFGYSTFWVTKEEPFGDLGEGILFIGNLRGKREDVFAKLQNQLVEVTGDKYNLFMVEEPNADSPDPRGGPRVSFGLLRKEVSEPGPMTLWQYVIALLLFLLTIGSSVELGIASQINRLPPEVVKYFTDPDAVEAPDMELLFPFVDSALPLAYGVLGVLLFHEVGHFLSAFPKQVKLSIPFFIPNITLGSFGAITQFKSILPDRSTQVDISLAGPFAGAVLSFSMFAVGLLLSSNPDITGDLVQVPSLLFQGSLLLGLISRATLGYAAMHAETVPIHPLVIAGWCGLTIQAFNMLPVGCLDGGRAVQGAFGKNALVGFGLTTYTLLGLGVLGGPLSLPWGLYVLLCQRAPEKPCLNDVTEVGTWRKALVAIAIFLVVLTLVPVGDELAEELGIGLVTAF*

>Glyma19g29390.2   sequence type=predicted peptide   gene model=Glyma19g29390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTLTSCSFMPLNSEFRSNPVRRAFRERIQCHKLTRLRGASSCFFSRARVPKWGKSKLSNFDSLRCFATNNDNNSDDGDKDSNNVGAAGEESGGDDSKSNVTTTMPEEERGFTSQKSTPPSTSQRSSLSSLGPAYNTFQVDSFKLIELLGPEKVDPADVKLIKDKLFGYSTFWVTKEEPFGDLGEGILFIGNLRGKREDVFAKLQNQLVEVTGDKYNLFMVEEPNADSPDPRGGPRVSFGLLRKEVSEPGPMTLWQYVIALLLFLLTIGSSVELGIASQINRLPPEVVKYFTDPDAVEAPDMELLFPFVDSALPLAYGVLGVLLFHEVGHFLSAFPKQVKLSIPFFIPNITLGSFGAITQFKSILPDRSTQVDISLAGPFAGAVLSFSMFAVGLLLSSNPDITGDLVQVPSLLFQGSLLLGLISRATLGYAAMHAETVPIHPLVIAGWCGLTIQAFNMLPVGCLDGGRAVQGAFGKNALVGFGLTTYTLLGLGVVYLN*

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