Glyma19g29360 - SoyBase

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Report for Sequence Feature Glyma19g29360

Feature Type:	gene_model
Chromosome:	Gm19
Start:	36909446
stop:	36917853
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g29360

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G04480	AT	Annotation by Michelle Graham. TAIR10: endoribonucleases \| chr3:1193988-1197320 REVERSE LENGTH=718	SoyBase	E_val: 0	ISS
GO:0004521	GO-mf	Annotation by Michelle Graham. GO Molecular Function: endoribonuclease activity	SoyBase	N/A	ISS
KOG2316	KOG	Predicted ATPase (PP-loop superfamily)	JGI		ISS
PTHR12196	Panther	DOMAIN OF UNKNOWN FUNCTION 71 (DUF71)-CONTAINING PROTEIN	JGI		ISS
PF01042	PFAM	Endoribonuclease L-PSP	JGI		ISS
PF01902	PFAM	ATP-binding region	JGI		ISS
UniRef100_G7KWG3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ATP-binding domain-containing protein n=1 Tax=Medicago truncatula RepID=G7KWG3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N8C3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N8C3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g29360

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g29360 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g115700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g29360

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g29360

Limit To All Plant Sequences

>Glyma19g29360.1   sequence type=CDS   gene model=Glyma19g29360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGGTGGTGGCACTCGTTAGCGGCGGTAAAGACAGTTGCTATGCCATGATGAAGGCTATTCACTATGGCCATGAGATTGTTGCATTGGCCAATTTGATGCCGCTTGATGATTCCGTGGACGAGCTCGATAGCTACATGTACCAAACTGTTGGGCATCAAATTATTGTCAGATATGCTGAATGCATGGGATTGCCATTGTTCAGGAGGCGAATACAAGGATCCTCAAGGCATCAGGAGCTTGGTTACAAAGAAACTCAAGGTGATGAAGTTGAAGACCTGTGCATTTTGTTACGTGAAGTTAAAAGGCAGATACCCTCAGTTAGTGCAGTTTCTTCTGGAGCCATTGCATCTGACTATCAGAGATTGCGGGTGGAAAGTGTTTGTTCAAGGTTAGGCCTTGTTTCTCTGGCATACTTATGGAAACAAGATCAGTCATTGCTTCTCCAGGAAATGATTACAAATGGAATTGTAGCTGTAACTGTGAAGGTAGCTGCCATGGGTTTGGATCCTGCAAAGCACTTGGGTAAAGAATTAGCCTTCTTAAATGCTTATTTACATAAATTGAAAGAATTGTATGGAATCAATGTTTGTGGTGAAGGAGGGGAATATGAAACATTAACTCTTGATTGCCCGCTCTTTTCTAATGCTCGCATTGTGCTTGATGAATATCAAGTTGTGATGCACTCTTCAGATTCCATAGCTCCTGTCGGAATCCTTCATCCCCTGGCATTTCATTTGGAAAATAAGGCAGATGTTCAGTATTTAAAATCACAAGACAAAATACATGAGAGTTTTACACAGAAACTGGGATCTGTTTTTGAAGTGCAAGACAGTGTAGAAGGATGTGAGGCCACATGCAAGCCTGTAGATTATAGAGCTGACCCAATTAATGACATAGAACATAAATTTAACATCTCAAGAACAAATAACAAGGGCACATTCTCCATATGTTTCTGGTTGCAAGATTCATGCAATGGTTTGCAGGAAGACTTGAAGATTGTTTTGGGGAAAATTGAATCACAGTTATTGGGCCTTGGTTTTGGCTGGGAGAATGTCCTTTATATTCACCTTTACATTGATGACATGAATAATTTCTCTGAGGCAAATGAGACATATGTGAAGTTTATAACACAGGAGAAATGTCCATTTGGTGTTCCGTCTCGTAGTACTGTTGAAATGCCTCTTATAGAAATGGGTTTCAGCAGAGCATACATTGAAGTACTGGTAGCAAACAATAAAGATAAAAAGGTTTTGCATGTACAGAGTATTTCCTCTTGGGCACCTAGTTGCATTGGGCCATACAGCCAGGCAACCTTGCATGAGGGTATACTTCACATGGCTGGTCAATTGGGGCTTGATCCTCCTACAATGAATCTTTGCAAGGGAGGCCCTGGTGTTGAACTGGAACAAGCACTAAAAAACAGTGAAGCGGTGGCAAAATGCTTTAATTGTTCAATAACGACATCTGCAATTGCTTTTGTTATTTACTGTTCTAAACATATTTCATTATTGGAGAGACTTGATATTCAGGAGAAGCAAGAAACAATCCTTAGACAGATGAAGATCTCCCATTTACAGGAAAGAACCACTTACAAAGCATTAGATCCCTTGTTCCTTTATGTTCTTGTTCCTGATCTACCTAAAAGAGCATATGTAGAAGTAAAGCCTATTCTTTATGTCGAGGATGACACGGATGTAGCATTTGAGGTCGTAACAGAAAGATTTTGTTTGGAGACACCACCAAGTTATTGGGGTTTCAAGCCGGAAAATTGGCATGATTCTTGCACTCAGAAATGTGTGATTTCTGGAAAGACATGTGCCATTATACTGTCTATTACTAGTGAGCTGGCTGCGAAGATATGTTTTGATTCTCTGCCTGCTGAATATGTGAATAATGGTCAGCATTCTCTTCCAAAGGCACATATGGAGAAGATATCAAAGTTCTGCATTTACCTTCTTGACAAAGTTATGACAGACGATGACTTTGCTTGGGAAGATATAATGAGTTTGAGGTTCTACATCCCTGTAAGCCTTCAAATGTCAGTGCAGCTATTACAACCTATGTTCTGCAATGCTCTTTTTGAACTTTCGGAAATGAGTCAGAAGAAATTAAAAACTGGTGAGGAGCCAATCTTCAACATAGTTCCTGTCATAGGTTCTGGGAGGTCTGCTTCATCCATGGACGATGTAGTAACCTGTGAATTAATGGCTCAGAAATCCTGA

Predicted protein sequences of Glyma19g29360

Limit To All Plant Sequences

>Glyma19g29360.1   sequence type=predicted peptide   gene model=Glyma19g29360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKVVALVSGGKDSCYAMMKAIHYGHEIVALANLMPLDDSVDELDSYMYQTVGHQIIVRYAECMGLPLFRRRIQGSSRHQELGYKETQGDEVEDLCILLREVKRQIPSVSAVSSGAIASDYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGIVAVTVKVAAMGLDPAKHLGKELAFLNAYLHKLKELYGINVCGEGGEYETLTLDCPLFSNARIVLDEYQVVMHSSDSIAPVGILHPLAFHLENKADVQYLKSQDKIHESFTQKLGSVFEVQDSVEGCEATCKPVDYRADPINDIEHKFNISRTNNKGTFSICFWLQDSCNGLQEDLKIVLGKIESQLLGLGFGWENVLYIHLYIDDMNNFSEANETYVKFITQEKCPFGVPSRSTVEMPLIEMGFSRAYIEVLVANNKDKKVLHVQSISSWAPSCIGPYSQATLHEGILHMAGQLGLDPPTMNLCKGGPGVELEQALKNSEAVAKCFNCSITTSAIAFVIYCSKHISLLERLDIQEKQETILRQMKISHLQERTTYKALDPLFLYVLVPDLPKRAYVEVKPILYVEDDTDVAFEVVTERFCLETPPSYWGFKPENWHDSCTQKCVISGKTCAIILSITSELAAKICFDSLPAEYVNNGQHSLPKAHMEKISKFCIYLLDKVMTDDDFAWEDIMSLRFYIPVSLQMSVQLLQPMFCNALFELSEMSQKKLKTGEEPIFNIVPVIGSGRSASSMDDVVTCELMAQKS*

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