SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G04480 | AT | Annotation by Michelle Graham. TAIR10: endoribonucleases | chr3:1193988-1197320 REVERSE LENGTH=718 | SoyBase | E_val: 0 | ISS |
| GO:0004521 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: endoribonuclease activity | SoyBase | N/A | ISS |
| KOG2316 | KOG | Predicted ATPase (PP-loop superfamily) | JGI | ISS | |
| PTHR12196 | Panther | DOMAIN OF UNKNOWN FUNCTION 71 (DUF71)-CONTAINING PROTEIN | JGI | ISS | |
| PF01042 | PFAM | Endoribonuclease L-PSP | JGI | ISS | |
| PF01902 | PFAM | ATP-binding region | JGI | ISS | |
| UniRef100_G7KWG3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ATP-binding domain-containing protein n=1 Tax=Medicago truncatula RepID=G7KWG3_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1N8C3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N8C3_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma19g29360 not represented in the dataset |
Glyma19g29360 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g115700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g29360.1 sequence type=CDS gene model=Glyma19g29360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGGTGGTGGCACTCGTTAGCGGCGGTAAAGACAGTTGCTATGCCATGATGAAGGCTATTCACTATGGCCATGAGATTGTTGCATTGGCCAATTTGATGCCGCTTGATGATTCCGTGGACGAGCTCGATAGCTACATGTACCAAACTGTTGGGCATCAAATTATTGTCAGATATGCTGAATGCATGGGATTGCCATTGTTCAGGAGGCGAATACAAGGATCCTCAAGGCATCAGGAGCTTGGTTACAAAGAAACTCAAGGTGATGAAGTTGAAGACCTGTGCATTTTGTTACGTGAAGTTAAAAGGCAGATACCCTCAGTTAGTGCAGTTTCTTCTGGAGCCATTGCATCTGACTATCAGAGATTGCGGGTGGAAAGTGTTTGTTCAAGGTTAGGCCTTGTTTCTCTGGCATACTTATGGAAACAAGATCAGTCATTGCTTCTCCAGGAAATGATTACAAATGGAATTGTAGCTGTAACTGTGAAGGTAGCTGCCATGGGTTTGGATCCTGCAAAGCACTTGGGTAAAGAATTAGCCTTCTTAAATGCTTATTTACATAAATTGAAAGAATTGTATGGAATCAATGTTTGTGGTGAAGGAGGGGAATATGAAACATTAACTCTTGATTGCCCGCTCTTTTCTAATGCTCGCATTGTGCTTGATGAATATCAAGTTGTGATGCACTCTTCAGATTCCATAGCTCCTGTCGGAATCCTTCATCCCCTGGCATTTCATTTGGAAAATAAGGCAGATGTTCAGTATTTAAAATCACAAGACAAAATACATGAGAGTTTTACACAGAAACTGGGATCTGTTTTTGAAGTGCAAGACAGTGTAGAAGGATGTGAGGCCACATGCAAGCCTGTAGATTATAGAGCTGACCCAATTAATGACATAGAACATAAATTTAACATCTCAAGAACAAATAACAAGGGCACATTCTCCATATGTTTCTGGTTGCAAGATTCATGCAATGGTTTGCAGGAAGACTTGAAGATTGTTTTGGGGAAAATTGAATCACAGTTATTGGGCCTTGGTTTTGGCTGGGAGAATGTCCTTTATATTCACCTTTACATTGATGACATGAATAATTTCTCTGAGGCAAATGAGACATATGTGAAGTTTATAACACAGGAGAAATGTCCATTTGGTGTTCCGTCTCGTAGTACTGTTGAAATGCCTCTTATAGAAATGGGTTTCAGCAGAGCATACATTGAAGTACTGGTAGCAAACAATAAAGATAAAAAGGTTTTGCATGTACAGAGTATTTCCTCTTGGGCACCTAGTTGCATTGGGCCATACAGCCAGGCAACCTTGCATGAGGGTATACTTCACATGGCTGGTCAATTGGGGCTTGATCCTCCTACAATGAATCTTTGCAAGGGAGGCCCTGGTGTTGAACTGGAACAAGCACTAAAAAACAGTGAAGCGGTGGCAAAATGCTTTAATTGTTCAATAACGACATCTGCAATTGCTTTTGTTATTTACTGTTCTAAACATATTTCATTATTGGAGAGACTTGATATTCAGGAGAAGCAAGAAACAATCCTTAGACAGATGAAGATCTCCCATTTACAGGAAAGAACCACTTACAAAGCATTAGATCCCTTGTTCCTTTATGTTCTTGTTCCTGATCTACCTAAAAGAGCATATGTAGAAGTAAAGCCTATTCTTTATGTCGAGGATGACACGGATGTAGCATTTGAGGTCGTAACAGAAAGATTTTGTTTGGAGACACCACCAAGTTATTGGGGTTTCAAGCCGGAAAATTGGCATGATTCTTGCACTCAGAAATGTGTGATTTCTGGAAAGACATGTGCCATTATACTGTCTATTACTAGTGAGCTGGCTGCGAAGATATGTTTTGATTCTCTGCCTGCTGAATATGTGAATAATGGTCAGCATTCTCTTCCAAAGGCACATATGGAGAAGATATCAAAGTTCTGCATTTACCTTCTTGACAAAGTTATGACAGACGATGACTTTGCTTGGGAAGATATAATGAGTTTGAGGTTCTACATCCCTGTAAGCCTTCAAATGTCAGTGCAGCTATTACAACCTATGTTCTGCAATGCTCTTTTTGAACTTTCGGAAATGAGTCAGAAGAAATTAAAAACTGGTGAGGAGCCAATCTTCAACATAGTTCCTGTCATAGGTTCTGGGAGGTCTGCTTCATCCATGGACGATGTAGTAACCTGTGAATTAATGGCTCAGAAATCCTGA
>Glyma19g29360.1 sequence type=predicted peptide gene model=Glyma19g29360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKVVALVSGGKDSCYAMMKAIHYGHEIVALANLMPLDDSVDELDSYMYQTVGHQIIVRYAECMGLPLFRRRIQGSSRHQELGYKETQGDEVEDLCILLREVKRQIPSVSAVSSGAIASDYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGIVAVTVKVAAMGLDPAKHLGKELAFLNAYLHKLKELYGINVCGEGGEYETLTLDCPLFSNARIVLDEYQVVMHSSDSIAPVGILHPLAFHLENKADVQYLKSQDKIHESFTQKLGSVFEVQDSVEGCEATCKPVDYRADPINDIEHKFNISRTNNKGTFSICFWLQDSCNGLQEDLKIVLGKIESQLLGLGFGWENVLYIHLYIDDMNNFSEANETYVKFITQEKCPFGVPSRSTVEMPLIEMGFSRAYIEVLVANNKDKKVLHVQSISSWAPSCIGPYSQATLHEGILHMAGQLGLDPPTMNLCKGGPGVELEQALKNSEAVAKCFNCSITTSAIAFVIYCSKHISLLERLDIQEKQETILRQMKISHLQERTTYKALDPLFLYVLVPDLPKRAYVEVKPILYVEDDTDVAFEVVTERFCLETPPSYWGFKPENWHDSCTQKCVISGKTCAIILSITSELAAKICFDSLPAEYVNNGQHSLPKAHMEKISKFCIYLLDKVMTDDDFAWEDIMSLRFYIPVSLQMSVQLLQPMFCNALFELSEMSQKKLKTGEEPIFNIVPVIGSGRSASSMDDVVTCELMAQKS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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