SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G39890 | AT | Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1637) | chr5:15974543-15976013 FORWARD LENGTH=276 | SoyBase | E_val: 2.00E-77 | ISS |
| GO:0001666 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to hypoxia | SoyBase | N/A | ISS |
| GO:0009862 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010089 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylem development | SoyBase | N/A | ISS |
| GO:0010310 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process | SoyBase | N/A | ISS |
| GO:0044036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0047800 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cysteamine dioxygenase activity | SoyBase | N/A | ISS |
| KOG4281 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR22966 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF07847 | PFAM | Protein of unknown function (DUF1637) | JGI | ISS | |
| UniRef100_I1N8C2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N8C2_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q2HVC5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 2-aminoethanethiol dioxygenase n=1 Tax=Medicago truncatula RepID=Q2HVC5_MEDTR | SoyBase | E_val: 4.00E-156 | ISS |
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Glyma19g29350 not represented in the dataset |
Glyma19g29350 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g115600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g29350.1 sequence type=CDS gene model=Glyma19g29350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGCAAGTTTGGTGGAGAGGGGTAGAGAGAGAGCTGGACATGTTAACAAGGTTGGTTATGTTAGAAGGGTCATTGCAAAGAAGAAGAAACAGCTTTATCGAAGGGTTAGGAGACCTGAGTTGAGTGTTTCAAAGACACTTCACCAATTATTTGATTCATGCAGAGAAGCTTTCAAAGGCCCTGGGACTGTTCCTTCACCACAAGATGTTAAGAGATTGACTCACATACTTGATAACATGAAGCCAGAAGATGTGGGGCTAAGTAGAGATCTGCAGTTCTTCAAGCCTGGAAATATTGTCAAAGAGAACCAAAGGGTCACTTATACAACCGTGTACAAGTGTGACAATTTCTCACTCTGCATCTTTTTCATACCTGAAGGAGGAGTCATTCCTCTCCACAACCACCCGGACATGACTGTTTTCAGCAAGCTTTTATTAGGACTAATGCACATTAAGTCCTATGATTGGGTTGAGCCTGAGGCCTCTGATGATAACATGTTGCAACCACAATCTCAATTGAGATTGGCAAGGTTAAAAGTTGATAAGGTGTTCACATCTTCATGTGGCACTTCTGTCCTGTATCCAACAACAGGAGGCAACATCCATGAATTCACAGCCATAACCCCATGTGCTGTGCTTGATGTCATTGGCCCTCCTTATTCCAAAGAAGATGGAAGGGACTGTTCCTACTACAGAGATCACCCTTATACTTGTTTTCCTAACGAAAGGATTATTGGTGAGGCAAAAGAGGAAAATGATAGTTACACGTGGCTGGAAGAAATTGAGATGCCAGAGAACTCTGAAATGAATGGCGTTGAGTACCTGGGTCCAACACCCTCTTAG
>Glyma19g29350.1 sequence type=predicted peptide gene model=Glyma19g29350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEASLVERGRERAGHVNKVGYVRRVIAKKKKQLYRRVRRPELSVSKTLHQLFDSCREAFKGPGTVPSPQDVKRLTHILDNMKPEDVGLSRDLQFFKPGNIVKENQRVTYTTVYKCDNFSLCIFFIPEGGVIPLHNHPDMTVFSKLLLGLMHIKSYDWVEPEASDDNMLQPQSQLRLARLKVDKVFTSSCGTSVLYPTTGGNIHEFTAITPCAVLDVIGPPYSKEDGRDCSYYRDHPYTCFPNERIIGEAKEENDSYTWLEEIEMPENSEMNGVEYLGPTPS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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