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Report for Sequence Feature Glyma19g29316

Feature Type:gene_model
Chromosome:Gm19
Start:36871086
stop:36894489
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g29316
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G14660AT Annotation by Michelle Graham. TAIR10: peptide deformylase 1B | chr5:4727129-4728671 REVERSE LENGTH=273 SoyBaseE_val: 1.00E-106ISS
GO:0006412GO-bp Annotation by Michelle Graham. GO Biological Process: translation SoyBaseN/AISS
GO:0010027GO-bp Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization SoyBaseN/AISS
GO:0019288GO-bp Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0005506GO-mf Annotation by Michelle Graham. GO Molecular Function: iron ion binding SoyBaseN/AISS
GO:0042586GO-mf Annotation by Michelle Graham. GO Molecular Function: peptide deformylase activity SoyBaseN/AISS
KOG3137 KOG Peptide deformylase JGI ISS
PTHR10458Panther POLYPEPTIDE DEFORMYLASE JGI ISS
PF01327PFAM Polypeptide deformylase JGI ISS
UniRef100_B9S632UniRef Annotation by Michelle Graham. Most informative UniRef hit: Polypeptide deformylase, putative n=1 Tax=Ricinus communis RepID=B9S632_RICCO SoyBaseE_val: 1.00E-118ISS
UniRef100_I1N755UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N755_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g29316
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g29316 not represented in the dataset
Glyma19g29316 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g29316 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma19g29316
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma19g29316
>Glyma19g29316.2   sequence type=transcript   gene model=Glyma19g29316   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTTCCAACTTGAAGTTAGTATATAAAGAATCAAAGTCCAAGTCTAGACCGCGGACAAATTAATCTCCATACAATAATCCGAGTGACACTCCTCACTTTGTGGCCATGGCTTCACTGAGGTGCCTCCACTCAACCCACCCTCATCTTCATCGCGGTTCAGCGCTTCTCGCCATTTCGAACCGCTGCTTCAACCATTCCTCCTTGCTGAACCGGACTCTCTCCGTAAACCCTCCTCGAACCGCTCCTCCACGCGCCATGGCCAAGCCCAGTTTCTCAACTGCCCAAGACCTAGTGGCTTCTCCTGGCGATTTTGAATTTGCGCAGCCTCTGAAAATTGTGGAGTATCCCGACCCGAGATTGAGGGCCAGGAATAAGCGCATAGTTGCCTTCGATGATAGTCTGAAGAAGCTTGTCCACGAAATGTTTGATGTAATGTACAAAACTGATGGTATTGGTCTCTCAGCACCCCAATTAGGAATTAATGTTCAACTTATGGTGTTCAATCCAGTAGGTGAGCGTGGTGAAGGAGAGGAAATTGTTCTTGTAAACCCAAGAGTTAGCCAATACTCAAAGAAACTGACACTATTTAATGAAGGTTGCCTATCTTTCCCAGGCATCAATGCTGATGTAAAGCGACCAGAATCTGTGAAGATTGATGCACGTGATATCAATGGAACAAGGTTTTCAGTCAACTTGTCTGACCTTCCTGCACGAATATTTCAGCATGAATTTGACCATCTACAAGGAATTCTTTTCTTTGAGAGAATGACTGAAGAAGTTCTTGATGGTATTTGTGGACAGTTACAGGCCCTAGAAACAAAGTACGAGGGAATGACTGGACTCTCAAGCCCTGAAAAGATAGAAAACCGCAGGAGGAGAAAGGTCGCTGTTGGTTTTGGGAAACGATGATCTTCAAGGTCAATATTAGGCATAATACTGAATGCACACTTGACAGACATTTCAAGTTTGAACTTCATAAAAAGATGAAGCATAGATTACAGGTACTGCATATGGTTGGTTATGCTGGAGATGTATCATTTATATGTATATAGAAAATGAGCTAGTGACTCTGATTATCATTATACTTAATCGAGTTTTCTCTGGGTGGACTTCCTTGTCTAGGTGCAATTGTTTATGAATAGTCATTGGAAGGCATCTCTATTGTATCCATGCCATTGAGTTGTTCATGTTGCCCTGAAGGGAACAACTGTCTTGAAGGGCTATAATAATATTCGGGCGGGCGTGCATGTGTGTAAAAAACAAATTAGTTACAAATTATTAACTTTTTTTTATTATAAATTATCTTGCGATAAATTACTTATGGATTACTTGTTAATATTTTTGTAGTTAATTGTAATTCATAATATTAATCATA
Coding sequences of Glyma19g29316
>Glyma19g29316.1   sequence type=CDS   gene model=Glyma19g29316   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCACTGAGGTGCCTCCACTCAACCCACCCTCATCTTCATCGCGGTTCAGCGCTTCTCGCCATTTCGAACCGCTGCTTCAACCATTCCTCCTTGCTGAACCGGACTCTCTCCGTAAACCCTCCTCGAACCGCTCCTCCACGCGCCATGGCCAAGCCCAGTTTCTCAACTGCCCAAGACCTAGTGGCTTCTCCTGGCGATTTTGAATTTGCGCAGCCTCTGAAAATTGTGGAGTATCCCGACCCGAGATTGAGGGCCAGGAATAAGCGCATAGTTGCCTTCGATGATAGTCTGAAGAAGCTTGTCCACGAAATGTTTGATGTAATGTACAAAACTGATGGTATTGGTCTCTCAGCACCCCAATTAGGAATTAATGTTCAACTTATGGTGTTCAATCCAGTAGGTGAGCGTGGTGAAGGAGAGGAAATTGTTCTTGTAAACCCAAGAGTTAGCCAATACTCAAAGAAACTGACACTATTTAATGAAGGTTGCCTATCTTTCCCAGGCATCAATGCTGATGTAAAGCGACCAGAATCTGTGAAGATTGATGCACGTGATATCAATGGAACAAGGTTTTCAGTCAACTTGTCTGACCTTCCTGCACGAATATTTCAGCATGAATTTGACCATCTACAAGGAATTCTTTTCTTTGAGAGAATGACTGAAGAAGTTCTTGATGGTATTTGTGGACAGTTACAGGCCCTAGAAACAAAGTACGAGGGAATGACTGGACTCTCAAGCCCTGAAAAGATAGAAAACCGCAGGAGGAGAAAGGTCGCTGTTGGTTTTGGGAAACGATGA

>Glyma19g29316.2   sequence type=CDS   gene model=Glyma19g29316   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCACTGAGGTGCCTCCACTCAACCCACCCTCATCTTCATCGCGGTTCAGCGCTTCTCGCCATTTCGAACCGCTGCTTCAACCATTCCTCCTTGCTGAACCGGACTCTCTCCGTAAACCCTCCTCGAACCGCTCCTCCACGCGCCATGGCCAAGCCCAGTTTCTCAACTGCCCAAGACCTAGTGGCTTCTCCTGGCGATTTTGAATTTGCGCAGCCTCTGAAAATTGTGGAGTATCCCGACCCGAGATTGAGGGCCAGGAATAAGCGCATAGTTGCCTTCGATGATAGTCTGAAGAAGCTTGTCCACGAAATGTTTGATGTAATGTACAAAACTGATGGTATTGGTCTCTCAGCACCCCAATTAGGAATTAATGTTCAACTTATGGTGTTCAATCCAGTAGGTGAGCGTGGTGAAGGAGAGGAAATTGTTCTTGTAAACCCAAGAGTTAGCCAATACTCAAAGAAACTGACACTATTTAATGAAGGTTGCCTATCTTTCCCAGGCATCAATGCTGATGTAAAGCGACCAGAATCTGTGAAGATTGATGCACGTGATATCAATGGAACAAGGTTTTCAGTCAACTTGTCTGACCTTCCTGCACGAATATTTCAGCATGAATTTGACCATCTACAAGGAATTCTTTTCTTTGAGAGAATGACTGAAGAAGTTCTTGATGGTATTTGTGGACAGTTACAGGCCCTAGAAACAAAGTACGAGGGAATGACTGGACTCTCAAGCCCTGAAAAGATAGAAAACCGCAGGAGGAGAAAGGTCGCTGTTGGTTTTGGGAAACGATGA
Predicted protein sequences of Glyma19g29316
>Glyma19g29316.1   sequence type=predicted peptide   gene model=Glyma19g29316   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASLRCLHSTHPHLHRGSALLAISNRCFNHSSLLNRTLSVNPPRTAPPRAMAKPSFSTAQDLVASPGDFEFAQPLKIVEYPDPRLRARNKRIVAFDDSLKKLVHEMFDVMYKTDGIGLSAPQLGINVQLMVFNPVGERGEGEEIVLVNPRVSQYSKKLTLFNEGCLSFPGINADVKRPESVKIDARDINGTRFSVNLSDLPARIFQHEFDHLQGILFFERMTEEVLDGICGQLQALETKYEGMTGLSSPEKIENRRRRKVAVGFGKR*

>Glyma19g29316.2   sequence type=predicted peptide   gene model=Glyma19g29316   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASLRCLHSTHPHLHRGSALLAISNRCFNHSSLLNRTLSVNPPRTAPPRAMAKPSFSTAQDLVASPGDFEFAQPLKIVEYPDPRLRARNKRIVAFDDSLKKLVHEMFDVMYKTDGIGLSAPQLGINVQLMVFNPVGERGEGEEIVLVNPRVSQYSKKLTLFNEGCLSFPGINADVKRPESVKIDARDINGTRFSVNLSDLPARIFQHEFDHLQGILFFERMTEEVLDGICGQLQALETKYEGMTGLSSPEKIENRRRRKVAVGFGKR*






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