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Report for Sequence Feature Glyma19g29261

Feature Type:gene_model
Chromosome:Gm19
Start:36839193
stop:36860219
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g29261
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G35910AT Annotation by Michelle Graham. TAIR10: Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain | chr5:14029871-14035405 REVERSE LENGTH=870 SoyBaseE_val: 0ISS
GO:0000085GO-bp Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle SoyBaseN/AISS
GO:0006139GO-bp Annotation by Michelle Graham. GO Biological Process: nucleobase-containing compound metabolic process SoyBaseN/AISS
GO:0009560GO-bp Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation SoyBaseN/AISS
GO:0009640GO-bp Annotation by Michelle Graham. GO Biological Process: photomorphogenesis SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0008408GO-mf Annotation by Michelle Graham. GO Molecular Function: 3'-5' exonuclease activity SoyBaseN/AISS
KOG2206 KOG Exosome 3'-5' exoribonuclease complex, subunit PM/SCL-100 (Rrp6) JGI ISS
PTHR12124Panther POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED JGI ISS
PTHR12124:SF2Panther POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED JGI ISS
PF00570PFAM HRDC domain JGI ISS
PF01612PFAM 3'-5' exonuclease JGI ISS
UniRef100_Q9FFL2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Nucleolar protein-like n=1 Tax=Arabidopsis thaliana RepID=Q9FFL2_ARATH SoyBaseE_val: 0ISS
UniRef100_UPI000233E30BUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E30B related cluster n=1 Tax=unknown RepID=UPI000233E30B SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g29261
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g29261 not represented in the dataset
Glyma19g29261 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g29261 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g115100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g29261
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g29261
>Glyma19g29261.1   sequence type=CDS   gene model=Glyma19g29261   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACTTCGATCACCACCTCACGGAGCTTTCCGCCTCCTCGCCGTTCATTCCATCCGGCGAGGACTTCCACTTCTACTACAAATTCAGGAACTTCCGCCGCCCGATCGAGGAAATTGCGAGGAGAACGCAGTCGATGCTCGACAGAATCGGCTCCGCGGAGAACATTTGGGGCAGAGGCTCGGCGTTCCCCGGTGACGTCGACGACGCGTACGAGTGGCTCGTGAACGCGAATGACGACGTTTTGGAGCTGGTGGAGGAGCTGGTGGACGAGTTGCGGATGCTCAAGAAGGACGAGGGAGAGGAATGTGACGGCGCGAATCCGAAAGTGCCGTTTCATATACCGACGATCAAGAAGCCCCAGTATGCGTACAACATTGTGGTTGATAATTCAAACGAGCCTTTTGAGCATATTTTGTTGGAGAAGAGTGATGATGGTCAGCGTTACATTCATCCACTGGAGAAACTCTCTGTTTTGGATTTTGTTGATAAAGAAAATCTCGAGAATCTTGTGCCAGTAGAGCCTCCCTCAATAGAATGCACCCCTTTCAAGCTTGTGGAGGATGTCAAAGGATTGAAGGAGGTGGCTGCTATGCTGTCTTCAGTTAATGAATTTGCGGTGGATTTGGAACATAATCATTATCGGTCTTTCCAAGGTTTGACTTGCTTGATGCAAATCTCAACCAGGACTGAAGATTTTGTTATAGATACTCTGAAGGTCCGCAATCATGTTGGGCCATACCTGAGGGAAGTCTTCAAGGACCCTACCAAGAAGAAGGTCATGCATGGAGCAGATCGAGACATTGTGTGGCTGCAACGGGATTTTGGCATTTATGTTTGCAATATGTTCGATACTGGCCAGTCTTCAAGAGTGTTAAAGTTGGACAGATATAGTCTGCAATATCTTTTGCAACAGTTTTGTGGGGTTACTGCAAACAAGGAATACCAGAGTGCAGATTGGAGATTACGCCCTCTTCCTGATGTGATGCTAAGATATGGCAGAGAAGATACACACTATCTGCTTTATATATATGATTTAATGAGGATCAAATTATTTGCATTGTCTAAGGAGTCTGAAGGTTCTGATAATCCTCTACTGGAGGTTTACAAGCGCAGTTATGATGTCTGCATGCAGCTATACGAGAAAGAGCTGCTGAAAGAAGACTCGTACCTTCATATATGGGGGTTGCGAGGGGCTGGTTTTAATGCTCAGCAGCTTGCCGTTGTTTCAGGACTTTGGGAATGGCGTGACGGTCTTGCTCGTGCAGACGATGAAGGTCCTGGCTATGTATTGCCAAATAGAATTATTCTTGAAATCGCTAACCAGATGCCTGTCATTATAAGCAATCTACGGCGAATAGTAGGAAGGACAAAACACCCATATGTTGAGCGCAGCCTTGATGTCATTGTCAACATTGTCAGACATTCTATGCAAAATGCTGCTGCCTTTGAAGAGGCTGCACTACGTTTGAAAGAAGAACATGCTGCAAGTTTGTCAAATGTGATACCCGTTAAGGATGGAACTGAAGTACCTCATACACTACAAAAGGATGGATGTGCAGCAAGAGGAAGCATGGGAATTGAAAATGGCTCCTGTGTTGATATCACACAAAACTGTATGCTTTCTTATGACCAAGAGGAGAAAAGTTTTCAGCATCAAGTTGAAGATGGACTATCCGATTGTCTCAATTCAGATCTACTAAGGGTCAAGAAGGAGATCAAGCCGGAACAGAGTAGATCGTCGTTAAATATTCCATCTCCCTTATTGTTGGGCAACAATGAGAAGTCAAGACTAGTTGCAGAAACTCCAAGTGTAACATATGAAACATCATACTCACGGGAGAAACTTGTTTCAGGTTCACCTTCTACCTCCAACCCTATTGGGATGGTAATGGTAGATTCAGCCAAGGAAAAGAAGATGAACGATGAGTAA
Predicted protein sequences of Glyma19g29261
>Glyma19g29261.1   sequence type=predicted peptide   gene model=Glyma19g29261   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDFDHHLTELSASSPFIPSGEDFHFYYKFRNFRRPIEEIARRTQSMLDRIGSAENIWGRGSAFPGDVDDAYEWLVNANDDVLELVEELVDELRMLKKDEGEECDGANPKVPFHIPTIKKPQYAYNIVVDNSNEPFEHILLEKSDDGQRYIHPLEKLSVLDFVDKENLENLVPVEPPSIECTPFKLVEDVKGLKEVAAMLSSVNEFAVDLEHNHYRSFQGLTCLMQISTRTEDFVIDTLKVRNHVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYVCNMFDTGQSSRVLKLDRYSLQYLLQQFCGVTANKEYQSADWRLRPLPDVMLRYGREDTHYLLYIYDLMRIKLFALSKESEGSDNPLLEVYKRSYDVCMQLYEKELLKEDSYLHIWGLRGAGFNAQQLAVVSGLWEWRDGLARADDEGPGYVLPNRIILEIANQMPVIISNLRRIVGRTKHPYVERSLDVIVNIVRHSMQNAAAFEEAALRLKEEHAASLSNVIPVKDGTEVPHTLQKDGCAARGSMGIENGSCVDITQNCMLSYDQEEKSFQHQVEDGLSDCLNSDLLRVKKEIKPEQSRSSLNIPSPLLLGNNEKSRLVAETPSVTYETSYSREKLVSGSPSTSNPIGMVMVDSAKEKKMNDE*






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