Report for Sequence Feature Glyma19g29240
Feature Type: gene_model
Chromosome: Gm19
Start: 36821014
stop: 36824769
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g29240
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G34930 AT
Annotation by Michelle Graham. TAIR10: disease resistance family protein / LRR family protein | chr2:14737169-14739886 REVERSE LENGTH=905
SoyBase E_val: 2.00E-73 ISS
GO:0006952 GO-bp
Annotation by Michelle Graham. GO Biological Process: defense response
SoyBase N/A ISS
GO:0007165 GO-bp
Annotation by Michelle Graham. GO Biological Process: signal transduction
SoyBase N/A ISS
GO:0050832 GO-bp
Annotation by Michelle Graham. GO Biological Process: defense response to fungus
SoyBase N/A ISS
GO:0005618 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cell wall
SoyBase N/A ISS
KOG0472
KOG
Leucine-rich repeat protein
JGI ISS
PTHR24420 Panther
FAMILY NOT NAMED
JGI ISS
PF00560 PFAM
Leucine Rich Repeat
JGI ISS
PF08263 PFAM
Leucine rich repeat N-terminal domain
JGI ISS
UniRef100_G7IZY4 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Receptor-like protein kinase n=1 Tax=Medicago truncatula RepID=G7IZY4_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI000233E9FA UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233E9FA related cluster n=1 Tax=unknown RepID=UPI000233E9FA
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g29240
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma19g29240 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g115000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g29240
Coding sequences of Glyma19g29240
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g29240.1 sequence type=CDS gene model=Glyma19g29240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGTGTCCTCTATTTCTCAAACTTCAATCCTTTTGCTCCTACTTTTTTATGCATCCACATTCCAAAAAGGTATGTCTAATAATCTTAGGGAGGTTCGTTGCAATGAGAAGGATCGACAGACATTGCTAATCTTCAAACAAGGCATTGTTCGTGATCCATATAACAAGCTCGTGACGTGGTCAAGTGAAAAAGACTGTTGTGCATGGAAGGGTGTTCAGTGTGACAACACCACAAGCAGAGTTACAAAACTTGATCTATCTACACAATCTCTGGAAGGTGAAATGAACTTAGCTTTGCTGGAACTTGAATTTCTAAATCACTTGGATTTGAGTATGAACAACTTTAATGCTATTAGCATTCCATCTATTCCCAATGATGTCATATCTGACTCTAACCTCCAGTACCTTGACTTATCTTTGAGTGGTTATAATCTTTCCATGGATAATCTTAATTGGCTTTCTCAACTTTCTTCCTTGAAACAACTTGACCTCAGAGGGACTGATCTCCACAAAGAAACCAACTGGCTTTTGGCTATGCCTCCTTCATTATCAAACTTATACTTGAGAGATTGTCAACTAACCAGCATAAGTCCTTCTGCGAATCTTACCTCACTCGTAACTGTTGATCTTTCTTATAACAATTTCAACTCTGAATTACCATGTTGGCTGTTTAATCTCAGTAATGACATCTCTCATCTCGATCTTTCATGGAGTAGTTTACATGGTGAAATACCTTTAAGTTTGTTCAACCACCAAAATTTGGAATACCTTGATCTATCCCACAACATGTTTTCTGGTTCCATTCCTTCGAGTTTGGGAAATCTCACATCCTTAACTTTCCTAGATATTGGTTCTAATTCCTTTTCCGGTACAATATCTGAAACTCATTTTTCTAGACTCCGCAATTTAGAATATTTACACTTGAGCAATTCAAGTTTTGCATTTCATTTCAATCCTGAATGGGTTCCTCTGTTTCAACTTAAAGTGCTTGATTTGGATAATACAAATCAAGGTGCCAAACTTCCATCATGGATATATACCCAAAAATCACTTGAGTATCTGGATATATCAAGCTCGGGAATTACATTTGTGGATGAAGATAGGTTTAAGAGACTTATAGCTGGAAATTATTTTATGCTCGATATGTCCAACAATTCAATCAATGAAGACATATCGAACGTGATGCTGAATTCTAGCTTTATAAAGTTACGCCATAATAACTTCTCAGGAAGGCTCCCACAATTATCAAATGTCCAATATGTGGATTTATCTCATAACTCTTTCACAGGATCAATTCCTCCTGGGTGGCAGAACTTGAATTATTTGTTTTATATTAACTTGTGGAGTAATAAGTTATTTGGTGAAGTTCCTGTGGAACTCTCAAACTTGACGCGATTAGAAGTCATGAACCTGGGAAAAAATGAATTTTATGGAACTATTCCGATCAACATGCCACAAAATTTACAAGTGGTGATATTGAGATATAATCACTTTGAGGGTAGTATTCCACCACAACTGTTCAATCTCTCTTTTCTAGCTCACTTGGATCTTGCCCACAATAAGCTTTCAGGATCAATACCTCAGGTTACGTATAACATTACCCAAATGGTTAGGAGTGAATTTTCACACAGCTTTGTTGATGATGACTTAATCAATTTGTTTACAAAAGGTCAAGATTATGAATATAATCTTAAGTGGCCTAGGGCAACTGTTGACCTTTCAGCTAACAACCTGACTGGAGAAATTCCTTTGGAATTATTTGGGCTGATTCAAGTTCAAACGTTGAATTTATCTTACAATCATTTGATTGGAACAATACCAAAGACCATTGGAGGCATGAAAAATCTCGAATCTCTTGATCTCTCTAATAATAAGCTTTTTGGAGAAATTCCACAAACCATGACTACACTGTCTTTTCTGAGTTATTTGAACATGTCATGCAACAATTTTACTGGACAAATCCCAATAGGTACTCAACTTCAGAGTTTTGATGCATCAAGCTATATTGGGAATCCAGAACTTTGTGGAGCTCCTCTTCCTAAATGTAACACAGAAGACAACAATCATGGTAATGCAACAGAAAATACAGATGGTGACTCTGAAAAGGAATCACTCTATCTTGGGATGGGAGTTGGATTTGCAGTTGGATTTTGGGGATTTTGTGGTTCTTTGCTCCTTCTTAGGAAATGGAGACATAAATACTATCGGTTCTTTGATCGACTGGCCGACCAACTGTATGTTACTTATATGGGGAAATTCAACATATTTGTAAACAGAGAAGCACCTGTTAGTTGA
Predicted protein sequences of Glyma19g29240
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g29240.1 sequence type=predicted peptide gene model=Glyma19g29240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MVSSISQTSILLLLLFYASTFQKGMSNNLREVRCNEKDRQTLLIFKQGIVRDPYNKLVTWSSEKDCCAWKGVQCDNTTSRVTKLDLSTQSLEGEMNLALLELEFLNHLDLSMNNFNAISIPSIPNDVISDSNLQYLDLSLSGYNLSMDNLNWLSQLSSLKQLDLRGTDLHKETNWLLAMPPSLSNLYLRDCQLTSISPSANLTSLVTVDLSYNNFNSELPCWLFNLSNDISHLDLSWSSLHGEIPLSLFNHQNLEYLDLSHNMFSGSIPSSLGNLTSLTFLDIGSNSFSGTISETHFSRLRNLEYLHLSNSSFAFHFNPEWVPLFQLKVLDLDNTNQGAKLPSWIYTQKSLEYLDISSSGITFVDEDRFKRLIAGNYFMLDMSNNSINEDISNVMLNSSFIKLRHNNFSGRLPQLSNVQYVDLSHNSFTGSIPPGWQNLNYLFYINLWSNKLFGEVPVELSNLTRLEVMNLGKNEFYGTIPINMPQNLQVVILRYNHFEGSIPPQLFNLSFLAHLDLAHNKLSGSIPQVTYNITQMVRSEFSHSFVDDDLINLFTKGQDYEYNLKWPRATVDLSANNLTGEIPLELFGLIQVQTLNLSYNHLIGTIPKTIGGMKNLESLDLSNNKLFGEIPQTMTTLSFLSYLNMSCNNFTGQIPIGTQLQSFDASSYIGNPELCGAPLPKCNTEDNNHGNATENTDGDSEKESLYLGMGVGFAVGFWGFCGSLLLLRKWRHKYYRFFDRLADQLYVTYMGKFNIFVNREAPVS*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
