Glyma19g29220 - SoyBase

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Report for Sequence Feature Glyma19g29220

Feature Type:	gene_model
Chromosome:	Gm19
Start:	36807619
stop:	36814040
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g29220

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G21720	AT	Annotation by Michelle Graham. TAIR10: Plant protein of unknown function (DUF639) \| chr2:9273696-9276802 FORWARD LENGTH=734	SoyBase	E_val: 0	ISS
PF04842	PFAM	Plant protein of unknown function (DUF639)	JGI		ISS
UniRef100_I1N8B5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N8B5_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q8LMQ8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q8LMQ8_ORYSJ	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g29220

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g29220

Paralog	Evidence	Comments
Glyma16g04180	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g29220 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g114800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g29220

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g29220

Limit To All Plant Sequences

>Glyma19g29220.1   sequence type=CDS   gene model=Glyma19g29220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGATGAAACTCAAATATCTGTCTTCCATTGCCGAGGATGTCATCAAGAGATGTTCACAGAAACTGGACACTTCGGTAGAGAAATTGGTGGTGGATTTTGAAGGGGGGTGGCACCCTGAAATGGGAAACTATTGCAGAAAATTAGTTGAATTTTGCAGTGGGAAGGCTGTGAGTGAATTGTGCCACAACATAGAGGGAAACATCAACGATGGCTCATTTAGCAGGTTGACATATGACATGATGCTTGCTTGGGAGAGACCTAGCTACTACGATGAAGAAGATACCACGGAGAATGTAGCAAAGGAGAAAGAAGAAAGGAAGATAACTTTGAATACCACTCAAGAACAGGATGATATCCCTCTTTTTTATTCAGACATCATGCCCCTCCTTGTTAATAATGAGCCCAATGTTGGAGAAGATGCATTTGTATGGTTGGGATCATTAGTACCTTTAGTTGCAGATGTAGCAAATGGAAGGTTTACTTTTGAATCTCTTACAGCACCGACAGGCAATCGACTACATTTTCCAGCATACGACATGTTCTTAAAAGAAATGGACAAGTGCATACGACATTTGCAGAAACATGCAACACCAAATGGGGTGGAACTGGCTGAGGATGAATATATATTACATGTAGATGGAACAGCCAGCACTCAGAGAGTAGTTCGCCACATTGGATCAACAAGTTGGCCTGGTAGGCTTACACTGACCAATTACTCTCTTTACTTTGAGGCTTCCGGAGTAATAAGGTATGAAGATGCTCTCAAAATAGACCTCTCCAAGAATATTGAGCAGAGTGTTGAACCTGCTGCCACAGGTCCATGGGGAGCACAACTTTATGACAAAGCCATAATCTATGATTCAACTGATTTATCAGAGACAGTTGTACTGGAGTTTCCAGAGCTTACGAGTTCCACGAGACGTGATCATTGGCTTGCACTAGTCAGAGAAATAATGTTTCTCCACCAGTTTTTATCAAAGTACCAGATAAAATGTCCAATACAAACATGGGAGCTGCATGCAAGGACAATCTTGGGAATTGTAAGGCTGCAAGCAGCAAGAGAAATGCTAAGAATATCACCTCCTGTCCCAACAAAATTCTTAATATTTTCCTTATATGACGAGATACCAAAGGGAGATTATGTGCTAGAAGAGCTTGCTGATAGCCTCAAAAAGGGCAATAATGGACAGTCATGTAGTGCAAGTTCTATCCTTAGAAGTATGAACATTTCTAAGACTGTAGATTCGTGTATAATAACAGATGAGGCAAGCCAAGCAGATGGAAGTGTTAATGTTGTAGACGATAGTCCCTTATTGGAGGCTGCTATCAAACAATCTAGGGAGGAAGAAAAGGAAATTCTCATTGCTAAAGCTACCACTGAAAAATTAAAGGATGAAGGAGTCATTGACAGTGTTTTGGTTATAACGGAACTACTGAAGCCACTTAAACATGTAGTCCCTTGGTTTCAAGAAATATTCACATGGGAGAGACCAATAATTACTCTTGCTGTTCTTGCTGCATCCCTGATGATCATCTATATGGAATGGGTTGGCAAGACATTTGCAGCTTTCTTGATTTGGGCAATAATAAAGATGCTTGATGCAAGAAAAAAGAAGATTCGTGAGAAATGCTACGAGATAGTTATCAGTAGATCCAGTATGGCTTCTGATCAATCTACGATGGAGAGCATTGTCTCGGCCCAGCATGGATTGTACACAATTCATGACATGATGCAGATAGCAAACATAGCAATGCTAAAGATATGGTCAATACTTATTTCAAAGGCTGATAAGCATGCAAATCTAGTGATGGTGGCAATGAGTGGATTGGCTATCTTATTGGCAGTAATTCCATTCAAATTCTTCCTTATGGCTCTCATTCTCCAAAGCTTCACTATGACATTAGGAAAGTCTTCTGGAAGTGGAACAGGGAATAGACGATTGAGGGAATGGTGGGATTCAATACCAATTGTTCCTATTCGTGTAGTAGACGATGTTCCTAACACTGTTGATGCTAAATAA

Predicted protein sequences of Glyma19g29220

Limit To All Plant Sequences

>Glyma19g29220.1   sequence type=predicted peptide   gene model=Glyma19g29220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAMKLKYLSSIAEDVIKRCSQKLDTSVEKLVVDFEGGWHPEMGNYCRKLVEFCSGKAVSELCHNIEGNINDGSFSRLTYDMMLAWERPSYYDEEDTTENVAKEKEERKITLNTTQEQDDIPLFYSDIMPLLVNNEPNVGEDAFVWLGSLVPLVADVANGRFTFESLTAPTGNRLHFPAYDMFLKEMDKCIRHLQKHATPNGVELAEDEYILHVDGTASTQRVVRHIGSTSWPGRLTLTNYSLYFEASGVIRYEDALKIDLSKNIEQSVEPAATGPWGAQLYDKAIIYDSTDLSETVVLEFPELTSSTRRDHWLALVREIMFLHQFLSKYQIKCPIQTWELHARTILGIVRLQAAREMLRISPPVPTKFLIFSLYDEIPKGDYVLEELADSLKKGNNGQSCSASSILRSMNISKTVDSCIITDEASQADGSVNVVDDSPLLEAAIKQSREEEKEILIAKATTEKLKDEGVIDSVLVITELLKPLKHVVPWFQEIFTWERPIITLAVLAASLMIIYMEWVGKTFAAFLIWAIIKMLDARKKKIREKCYEIVISRSSMASDQSTMESIVSAQHGLYTIHDMMQIANIAMLKIWSILISKADKHANLVMVAMSGLAILLAVIPFKFFLMALILQSFTMTLGKSSGSGTGNRRLREWWDSIPIVPIRVVDDVPNTVDAK*

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