SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G13530 | AT | Annotation by Michelle Graham. TAIR10: protein kinases;ubiquitin-protein ligases | chr5:4345618-4354369 FORWARD LENGTH=1624 | SoyBase | E_val: 2.00E-22 | ISS |
| GO:0000956 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process | SoyBase | N/A | ISS |
| GO:0006468 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein phosphorylation | SoyBase | N/A | ISS |
| GO:0006952 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0009738 | GO-bp | Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009788 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of abscisic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0016567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein ubiquitination | SoyBase | N/A | ISS |
| GO:0048589 | GO-bp | Annotation by Michelle Graham. GO Biological Process: developmental growth | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005769 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: early endosome | SoyBase | N/A | ISS |
| GO:0005802 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network | SoyBase | N/A | ISS |
| GO:0004672 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase activity | SoyBase | N/A | ISS |
| GO:0004842 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0043621 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein self-association | SoyBase | N/A | ISS |
| KOG4412 | KOG | 26S proteasome regulatory complex, subunit PSMD10 | JGI | ISS | |
| PTHR24198 | Panther | ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAININ | JGI | ISS | |
| PTHR24198:SF302 | Panther | JGI | ISS | ||
| PF00023 | PFAM | Ankyrin repeat | JGI | ISS | |
| PF00635 | PFAM | MSP (Major sperm protein) domain | JGI | ISS | |
| UniRef100_D3J162 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Hermes n=1 Tax=Medicago truncatula RepID=D3J162_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233E8A6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E8A6 related cluster n=1 Tax=unknown RepID=UPI000233E8A6 | SoyBase | E_val: 0 | ISS |
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Glyma19g29190 not represented in the dataset |
Glyma19g29190 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g04220 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g114600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g29190.2 sequence type=CDS gene model=Glyma19g29190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACAGGCTGATAAAAGTAGACCCAACAAACACGGTCCCTATAAGAATCGAGCCAGGCCAAAAATGCCACGGCCAAATAACCCTACGCAACGTGATGTACACCATGCCCGTGGCTTTCAGGCTTCAATCGTTGATCAAAACGCGTTACACGTTGAAGCCACAATCTGGTATCATATCTCCCTTATCCACAGTAACCATAGAAATCCTCTACAATCTTCCACTGGGCTCCACCCTCCCACACTCTTTTCCACACTCCGAAGACTCTTTCCTCCTCCACAGCGTCGTTGTTCCCGGTGCCACCGTGAAAGAACCCTCCTCCATGTTCGAATCTGTACCCTCTGATTGGTTCACCGCGAAGAAGAAACAAGTGTTCATCGACAGCGGCATCAAGATCATCTTCGTGGGCTCGTTGATCCTTGCCCAGTTAGTCCACAACGGGTCCATCGACGAAATCAGAGAAGTGCTGGAACACAGTGAACACACGTGGAAAGCCGTTGACTCCGTTGACCAAAACGGAGACACGCTCCTCCACGTGGCGATCTCCAAAAGCAGACCCGACATAGTGCAGCTCCTCCTGGAGTTCAACGCCGACGTGGAATCAAAAAACCGCACCGGCGAGACTCCGCTGGAATCAGCGTGTGCCTCCGGAGAAGAACTAATCGTTGAGCTTCTCTTAGCTCACAAGGCAAACACAGAGAGAACGGAATCTTCATCTTTAGGAGCGATTCATTTATCAGCAAGAGAAGGACGCAGGGAGGTTTTACGGTTACTGTTGCTGAAAGGGGCTAGCGTTGACTCGTTGACTAAAGACGGTTACACCGCGTTGCACCTTGCGGTTAGAGAAGGTTCAAGAGACTGCGCGAGGCTGTTACTAGCGAACAACGCGAGAACTGATATTAGAGATTCACGAGACGGAGACACGTGTCTGCACGTGGCGGCAGGGGTGGGAGACGAGAGCATGGTGAAGCTGTTGTTGAACAAGGGTGCTAACAAGGACGTGAGGAACTTTAACGGTAAGACTGCGTATGATGTTGCGGCGGAGAAGGGGCACGCGCGCGTGTTCGACGCGCTGCGGCTGGGGGATGGGTTGTGCGTGGCGGCGAGGAAGGGGGAGGTGAGGAGCATCCAGAGGCTGATAGAGGGGGGAGCGGTGGTGGACGGGAGGGACCAGCACGGGTGGACGGCGTTGCACAGGGCGTGTTTTAAGGGGCGCGTGGAGGCGGTGAGGGCGTTGCTGGAGAGAGGGATTGATGTGGAGGCGAGGGATGAGGATGGGTATACGGCGCTGCATTGCGCGGTGGAGGCGGGGCATGCTGACGTGGCGGAGGTGCTGGTGAAGAGGGGTGTGGATGTGGAGGCCAGGACGAATAAGGGTGTGACGGCTTTGCAGATCGCGGAGGCGTTGGGGTATGGTGGGATTGCGAGGCTGCTTGGTGCTGCTGCGGGACACGTGGCGGAAGGAGAACAACAATCTGTGCTTGGGGAGATGAAGAAGGAAAAGAAAAACAAGCTTGGAAGAAGAAGAAGGGAGAGGGAGATTCGGGGGAGCTTTGACCGGTCAATGCCTTTGCCTGTCCTCTAG
>Glyma19g29190.2 sequence type=predicted peptide gene model=Glyma19g29190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDRLIKVDPTNTVPIRIEPGQKCHGQITLRNVMYTMPVAFRLQSLIKTRYTLKPQSGIISPLSTVTIEILYNLPLGSTLPHSFPHSEDSFLLHSVVVPGATVKEPSSMFESVPSDWFTAKKKQVFIDSGIKIIFVGSLILAQLVHNGSIDEIREVLEHSEHTWKAVDSVDQNGDTLLHVAISKSRPDIVQLLLEFNADVESKNRTGETPLESACASGEELIVELLLAHKANTERTESSSLGAIHLSAREGRREVLRLLLLKGASVDSLTKDGYTALHLAVREGSRDCARLLLANNARTDIRDSRDGDTCLHVAAGVGDESMVKLLLNKGANKDVRNFNGKTAYDVAAEKGHARVFDALRLGDGLCVAARKGEVRSIQRLIEGGAVVDGRDQHGWTALHRACFKGRVEAVRALLERGIDVEARDEDGYTALHCAVEAGHADVAEVLVKRGVDVEARTNKGVTALQIAEALGYGGIARLLGAAAGHVAEGEQQSVLGEMKKEKKNKLGRRRREREIRGSFDRSMPLPVL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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