Glyma19g29121 - SoyBase

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Report for Sequence Feature Glyma19g29121

Feature Type:	gene_model
Chromosome:	Gm19
Start:	36694250
stop:	36697226
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g29121

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G32450	AT	Annotation by Michelle Graham. TAIR10: RNA binding (RRM/RBD/RNP motifs) family protein \| chr5:12079707-12081317 FORWARD LENGTH=267	SoyBase	E_val: 4.00E-72	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
UniRef100_G7L0G8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein vip1 n=1 Tax=Medicago truncatula RepID=G7L0G8_MEDTR	SoyBase	E_val: 2.00E-74	ISS
UniRef100_UPI000233E8A2	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E8A2 related cluster n=1 Tax=unknown RepID=UPI000233E8A2	SoyBase	E_val: 4.00E-93	ISS

Expression Patterns of Glyma19g29121

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g29121 not represented in the dataset	Glyma19g29121 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g29121

Paralog	Evidence	Comments
Glyma16g04290	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g29121 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma19g29121

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g29121

Limit To All Plant Sequences

>Glyma19g29121.2   sequence type=transcript   gene model=Glyma19g29121   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTTTAAAGGGACAATTATGGAATTTACGTGAGAATCACTGCATTGTTCCTGGTCTTTACGAGGTACCTGAGGACATGATTACATTCTAACACCACACATTCCTGTTATTTCTTTCTCTCTGCGTTCTTCTTCAATGCAACTCTATTCTGTTCGGTGACACAACATCACTCTGAAGAACGTCGCACGCACCACCCTTCTCTCTCTTCAACAACTCAGCTCTCAGAACAGATACAGTTTCCACTGAGTAAATCGCAATGCAGGTAACTGAGACGAGGGACTGTTCAAGTTAAGCAGCTTTCAGATCTAGCTGGGGGAGAGAGAGATTCACGAGTTCTTCTCCTTTTTCTGGAGAAATCGAGCATGTTGAGATCCTGAGGTGGGTACTTTTAATGCCAAATAAGTTCAATTTGTTTTTTTTTGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCCTTGAGTATTGAGGAGGGGAAAGCCAGCCCCACCAATAGAAGAATCTACCTTAGTAAAGCACAAGATGCAGTTACAAGTATGCTGGCAAAAGGTTCAGCAATAAGACAAGATGCAGTGAACAAAGCTAAAGCATTTGATGAAAAGCATCAGTTGACTGCCAATGCATCTGCAAAGGTCATTTCTTTGGACAAGAGAGTTGGACTCACAGAGAAATTGACAGTAGGCATTGCTGCAGTGAACCAGAAAGTCAAGTCTGTGGATCAGAGGCTTCAGGTTTCGGATAAGACAATGGCAGCAATAATTGCAGCTGAGAGGAAGATAAATAACACTGGATCAGCTGTCAAAACAAGCAGATATGTGACTGCTGGAACAGCATGGTTTAACGGTGCTTTTAGCAAGGTGGCAAAGGCTGGACATGTTGCAAGTACTAAAACTAGAGAAAAATTTCATTTGGCTGTTTCAAACTTGACAGCAAAGGAACCGTCAGTGGCTGCTGCATAGGCCACAATTTTTGGTAATCAAGTCATTTCATCAGGTCTTTCAGAACATGTGTTTGAAACTATTTGGTCTTTCAGAGCATGCGCTGCTTTCTTTCTGCCCTTCAACAGTTAGATGCATGTGGCAAGTGCGGTGATTCAATTTAATCCTATTTTTTGTATTCTTTTGTCACTCTGTTGTTTTAGTTGTTGCTTCTATATCATTTAGCACGAGTGATTTTGGCTTTTTTCCCTTTTGTGAAAAGGAAATTATAGGTGTGATGCTACTGCATTTCTTCTGTCAAAGTTCAAAAAAATTGTGCGTGTATAACTTGACATATGGTTCAAAGATTTCCGTGGGAAATTATCATCTTGCAGACTACAATTTCATTTCTTTGCTTATTCAATTGATAAAAATTGTAAAGAATTGTGTTGTGTTAGCTCAATTCGTTCAAATTTGTGTGTGCTTCAAAATGAACATGGATGAAAAATAACAAGCATAGTCAAGCATATACTTTTCAGTTTTGACCATGCTCTAATAATAGTCACAATGGTTAGGATCCTGGCAGGCGTAATAATGGACATTAGTGCACTCCACTTTTGACCAATATGGTGGCGGTCTTGTCGGCTAATCAAAGTGTTCCTCAGCATACAGACAAAAATTTGAATACTACTACTATAGTTCTAAACTGTTAGATATATTTTTGAATTTGTACAGTCATCAATTGTTGTTTCACGTGCTAGCCATGTCCTGTTTTTTATCTTTTTGTCAATGGTCCTTCTCTGTCATTATCTCTAATAAAATATTTCCATAAACATGTTGCATCGCATTTGGATGCTCAAAAG

>Glyma19g29121.3   sequence type=transcript   gene model=Glyma19g29121   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTTTAAAGGGACAATTATGGAATTTACGTGAGAATCACTGCATTGTTCCTGGTCTTTACGAGGTACCTGAGGACATGATTACATTCTAACACCACACATTCCTGTTATTTCTTTCTCTCTGCGTTCTTCTTCAATGCAACTCTATTCTGTTCGGTGACACAACATCACTCTGAAGAACGTCGCACGCACCACCCTTCTCTCTCTTCAACAACTCAGCTCTCAGAACAGATACAGTTTCCACTGAGTAAATCGCAATGCAGGTAACTGAGACGAGGGACTGTTCAAGTTAAGCAGCTTTCAGATCTAGCTGGGGGAGAGAGAGATTCACGAGTTCTTCTCCTTTTTCTGGAGAAATCGAGCATGTTGAGATCCTGAGGTGGGTACTTTTAATGCCAAATAAGTTCAATTTGTTTTTTTTTGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCCTTGAGTATTGAGGAGGGGAAAGCCAGCCCCACCAATAGAAGAATCTACCTTAGTAAAGCACAAGATGCAGTTACAAGTATGCTGGCAAAAGGTTCAGCAATAAGACAAGATGCAGTGAACAAAGCTAAAGCATTTGATGAAAAGCATCAGTTGACTGCCAATGCATCTGCAAAGGTCATTTCTTTGGACAAGAGAGTTGGACTCACAGAGAAATTGACAGTAGGCATTGCTGCAGTGAACCAGAAAGTCAAGTCTGTGGATCAGAGGCTTCAGGTTTCGGATAAGACAATGGCAGCAATAATTGCAGCTGAGAGGAAGATAAATAACACTGGATCAGCTGTCAAAACAAGCAGATATGTGACTGCTGGAACAGCATGGTTTAACGGTGCTTTTAGCAAGGTGGCAAAGGCTGGACATGTTGCAAGTACTAAAACTAGAGAAAAATTTCATTTGGCTGTTTCAAACTTGACAGCAAAGGAACCGTCAGTGGCTGCTGCATAGGCCACAATTTTTGGATCCTGGCAGGCGTAATAATGGACATTAGTGCACTCCACTTTTGACCAATATGGTGGCGGTCTTGTCGGCTAATCAAAGTGTTCCTCAGCATACAGACAAAAATTTGAATACTACTACTATAGTTCTAAACTGTTAGATATATTTTTGAATTTGTACAGTCATCAATTGTTGTTTCACGTGCTAGCCATGTCCTGTTTTTTATCTTTTTGTCAATGGTCCTTCTCTGTCATTATCTCTAATAAAATATTTCCATAAACATGTTGCATCGCATTTGGATGCTCA

Coding sequences of Glyma19g29121

Limit To All Plant Sequences

>Glyma19g29121.1   sequence type=CDS   gene model=Glyma19g29121   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGGCAAAAGGTTCAGCAATAAGACAAGATGCAGTGAACAAAGCTAAAGCATTTGATGAAAAGCATCAGTTGACTGCCAATGCATCTGCAAAGGTCATTTCTTTGGACAAGAGAGTTGGACTCACAGAGAAATTGACAGTAGGCATTGCTGCAGTGAACCAGAAAGTCAAGTCTGTGGATCAGAGGCTTCAGGTTTCGGATAAGACAATGGCAGCAATAATTGCAGCTGAGAGGAAGATAAATAACACTGGATCAGCTGTCAAAACAAGCAGATATGTGACTGCTGGAACAGCATGGTTTAACGGTGCTTTTAGCAAGGTGGCAAAGGCTGGACATGTTGCAAGTACTAAAACTAGAGAAAAATTTCATTTGGCTGTTTCAAACTTGACAGCAAAGGAACCGTCAGTGGCTGCTGCATAG

>Glyma19g29121.2   sequence type=CDS   gene model=Glyma19g29121   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGGCAAAAGGTTCAGCAATAAGACAAGATGCAGTGAACAAAGCTAAAGCATTTGATGAAAAGCATCAGTTGACTGCCAATGCATCTGCAAAGGTCATTTCTTTGGACAAGAGAGTTGGACTCACAGAGAAATTGACAGTAGGCATTGCTGCAGTGAACCAGAAAGTCAAGTCTGTGGATCAGAGGCTTCAGGTTTCGGATAAGACAATGGCAGCAATAATTGCAGCTGAGAGGAAGATAAATAACACTGGATCAGCTGTCAAAACAAGCAGATATGTGACTGCTGGAACAGCATGGTTTAACGGTGCTTTTAGCAAGGTGGCAAAGGCTGGACATGTTGCAAGTACTAAAACTAGAGAAAAATTTCATTTGGCTGTTTCAAACTTGACAGCAAAGGAACCGTCAGTGGCTGCTGCATAG

>Glyma19g29121.3   sequence type=CDS   gene model=Glyma19g29121   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGGCAAAAGGTTCAGCAATAAGACAAGATGCAGTGAACAAAGCTAAAGCATTTGATGAAAAGCATCAGTTGACTGCCAATGCATCTGCAAAGGTCATTTCTTTGGACAAGAGAGTTGGACTCACAGAGAAATTGACAGTAGGCATTGCTGCAGTGAACCAGAAAGTCAAGTCTGTGGATCAGAGGCTTCAGGTTTCGGATAAGACAATGGCAGCAATAATTGCAGCTGAGAGGAAGATAAATAACACTGGATCAGCTGTCAAAACAAGCAGATATGTGACTGCTGGAACAGCATGGTTTAACGGTGCTTTTAGCAAGGTGGCAAAGGCTGGACATGTTGCAAGTACTAAAACTAGAGAAAAATTTCATTTGGCTGTTTCAAACTTGACAGCAAAGGAACCGTCAGTGGCTGCTGCATAG

Predicted protein sequences of Glyma19g29121

Limit To All Plant Sequences

>Glyma19g29121.1   sequence type=predicted peptide   gene model=Glyma19g29121   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLAKGSAIRQDAVNKAKAFDEKHQLTANASAKVISLDKRVGLTEKLTVGIAAVNQKVKSVDQRLQVSDKTMAAIIAAERKINNTGSAVKTSRYVTAGTAWFNGAFSKVAKAGHVASTKTREKFHLAVSNLTAKEPSVAAA*

>Glyma19g29121.2   sequence type=predicted peptide   gene model=Glyma19g29121   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLAKGSAIRQDAVNKAKAFDEKHQLTANASAKVISLDKRVGLTEKLTVGIAAVNQKVKSVDQRLQVSDKTMAAIIAAERKINNTGSAVKTSRYVTAGTAWFNGAFSKVAKAGHVASTKTREKFHLAVSNLTAKEPSVAAA*

>Glyma19g29121.3   sequence type=predicted peptide   gene model=Glyma19g29121   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLAKGSAIRQDAVNKAKAFDEKHQLTANASAKVISLDKRVGLTEKLTVGIAAVNQKVKSVDQRLQVSDKTMAAIIAAERKINNTGSAVKTSRYVTAGTAWFNGAFSKVAKAGHVASTKTREKFHLAVSNLTAKEPSVAAA*

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