Glyma19g29050 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma19g29050

Feature Type:	gene_model
Chromosome:	Gm19
Start:	36611732
stop:	36615738
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g29050

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G20950	AT	Annotation by Michelle Graham. TAIR10: Glycosyl hydrolase family protein \| chr5:7107609-7110775 REVERSE LENGTH=624	SoyBase	E_val: 0	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0009627	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance	SoyBase	N/A	ISS
GO:0034976	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0004553	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds	SoyBase	N/A	ISS
PF00933	PFAM	Glycosyl hydrolase family 3 N terminal domain	JGI		ISS
PF01915	PFAM	Glycosyl hydrolase family 3 C terminal domain	JGI		ISS
UniRef100_I1ML02	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1ML02_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2HVM0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal n=1 Tax=Medicago truncatula RepID=Q2HVM0_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g29050

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g29050

Paralog	Evidence	Comments
Glyma16g04340	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g29050 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g113500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g29050

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g29050

Limit To All Plant Sequences

>Glyma19g29050.1   sequence type=CDS   gene model=Glyma19g29050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCTGGAGGGAATGGCTAAAATCTCCATCTTGTTGGTGGGGCTTTGGCTACTAGTTAACTGGTCAGGGTTGTTGGATGCAAAAAACATGAAGTACAAGAACCCTAAACACTCAACTGATACTCGGGTTGAGGATCTTGTTAGCAGGATGACTCTTGAGGAGAAAATTGGCCAAATGTTGCAGGTTGAGCGCAAGTATGTATCTGCTGATTTACTTAAGAAGTATTTTATTGGGGCTGTATTGAGTGAGGGAGGGAGTATTCCAGCTCCACAGGCTTCTGCTGAAACCTGGATTGACATGGTGAATGAATTTCAGAAGGGTGCCTTATCAACCCGGCTCGGAATTCCAATGTTTTATGGGATTGATGCCGTTCATGGCCACAACACGGTTCACAACGCAACTATTTTTCCTCACAATATTGGCCTTGGAGCTACCAGGGACCCTGAACTAGTTAAGAGAATTGGAGCTGCAACTGCCCTTGAAGTTAGAGCAACAGGAATTCAATATGTTTATTCACCTTGTATAGCAGTCTGTAGAGATCCAAGATGGGGTCGGTGTTATGAAAGCTTCAGTGAAGATCCTGAACTAGTTCAAGCTATGACTGAAATTATACCAGGATTGCAAGGGGACATCCCTAATGATTCACCAAAGGGTGTCCCTTTTATCACTGGAAAAGAAAAAGTTATAGGTTGTGCTAAGCACTACGTGGGTGATGGTGGAACAATCAATGGGATTGATGAGCACAACACTGTTATAGATAGAGATGGATTGATGAAAATTCACATGCCAGGCTACTTCAGCTCAATCAGCAAGGGTGTGGCAACCATTATGGCCTCTTACTCCAGTTGGAATGGAGTAAAAATGCATGCTCACCATGATCTTATTACTGGCTTCCTCAAGAATACTCTCCATTTCAAGGGCTTTGTCATTTCAGATTTTGAGGGTCTTGATAGGATCACCTCTCCACCTCGTGCAAATATCACTTATTCAATTGAAGCAGGAGTTTCTGCTGGCATTGACATGTTCATGGTTCCAAAGCATTACACAGAATTCATAGATGTTCTAACCATGTTGGTGAAAAATAAGCACATTCCCATGAGTCGAATTGATGATGCAGTGGGAAGAATTTTGTGGGTTAAGTTGATGATGGGTATTTTTGAGAACCCTTTTGCTGACTACAGTTTGGTCAAATATTTAGGAATCCAGGAACACAGAAATTTGGCTAGGGAAGCAGTAAGGAAATCAATGGTCCTTCTGAAAAATGGTGAATCTGCTGACAAGCCTTTATTGCCTCTTCCTAAAAAGTCGCCAAAAATACTTGTTGCGGGAAGCCATGCTGATAATCTAGGATATCAGTGTGGTGGCTGGACCATAGAATGGCAAGGAGTTAGTGGAAACAATCTTCTCAAAGGGACTACAATTCTCACTGCTGTGAAAAACACTGTTGATCCTGAAACCACAGTGGTCTACAAGGAGAACCCTGATGTAGAGTTTGTCAAATCCAATGGATTTTCCTATGCCATAGTTATAGTAGGGGAGCACCCTTATGCTGAAATGTATGGTGACAGCATGAACTTGACAATCCCAGAACCTGGTCCTAAGATCATAACAAATGTCTGTGGAGCAATAAAATGCGTGGTTATCATTATTTCTGGTCGTCCTGTAGTTATTGAACCATATGTTGGTTTAATAGATGCACTTGTTGCTGCATGGCTCCCAGGTAGCGAAGGCCAAGGTGTGGCTGATGTTTTATATGGCGGCTATGGTTTCACTGGAAAGCTTCCAAGGACATGGTTCAAAACTGTTGATCAACTGCCAATGAATGTTGGAGATCCTCACTATGATCCCCTCTTCCCATTTGGGTTTGGCCTTTCTACCAAACCTTCTAAGGCCCTTTATTCCTCTTGA

Predicted protein sequences of Glyma19g29050

Limit To All Plant Sequences

>Glyma19g29050.1   sequence type=predicted peptide   gene model=Glyma19g29050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLEGMAKISILLVGLWLLVNWSGLLDAKNMKYKNPKHSTDTRVEDLVSRMTLEEKIGQMLQVERKYVSADLLKKYFIGAVLSEGGSIPAPQASAETWIDMVNEFQKGALSTRLGIPMFYGIDAVHGHNTVHNATIFPHNIGLGATRDPELVKRIGAATALEVRATGIQYVYSPCIAVCRDPRWGRCYESFSEDPELVQAMTEIIPGLQGDIPNDSPKGVPFITGKEKVIGCAKHYVGDGGTINGIDEHNTVIDRDGLMKIHMPGYFSSISKGVATIMASYSSWNGVKMHAHHDLITGFLKNTLHFKGFVISDFEGLDRITSPPRANITYSIEAGVSAGIDMFMVPKHYTEFIDVLTMLVKNKHIPMSRIDDAVGRILWVKLMMGIFENPFADYSLVKYLGIQEHRNLAREAVRKSMVLLKNGESADKPLLPLPKKSPKILVAGSHADNLGYQCGGWTIEWQGVSGNNLLKGTTILTAVKNTVDPETTVVYKENPDVEFVKSNGFSYAIVIVGEHPYAEMYGDSMNLTIPEPGPKIITNVCGAIKCVVIIISGRPVVIEPYVGLIDALVAAWLPGSEGQGVADVLYGGYGFTGKLPRTWFKTVDQLPMNVGDPHYDPLFPFGFGLSTKPSKALYSS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain