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Report for Sequence Feature Glyma19g28980

Feature Type:gene_model
Chromosome:Gm19
Start:36543458
stop:36548913
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g28980
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G03860AT Annotation by Michelle Graham. TAIR10: APR-like 5 | chr3:992465-994315 FORWARD LENGTH=300 SoyBaseE_val: 1.00E-90ISS
GO:0045454GO-bp Annotation by Michelle Graham. GO Biological Process: cell redox homeostasis SoyBaseN/AISS
KOG2640 KOG Thioredoxin JGI ISS
PTHR18929Panther PROTEIN DISULFIDE ISOMERASE JGI ISS
PF00085PFAM Thioredoxin JGI ISS
UniRef100_G7KPL3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Thioredoxin domain-containing protein n=1 Tax=Medicago truncatula RepID=G7KPL3_MEDTR SoyBaseE_val: 8.00E-120ISS
UniRef100_I1N897UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N897_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g28980
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g28980
ParalogEvidenceComments
Glyma16g04430 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g28980 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g112900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g28980
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g28980
>Glyma19g28980.1   sequence type=CDS   gene model=Glyma19g28980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACTTCACTTCTTTTCTTCATCACTTGTCTCTCTCTTCTACCATCCTCTTATTGCTCTCCTTTTCCACCTTCTGCTTCCTTTCTCTATGAGCTTCAATCTCAGTGCTCCCTTGCCGTCTCCCCTGACCCTCCTCTTCGGGTGGATGGGAATTTCATAGAAGGGGTTTTGTCTGGCAGAAAGAGGGTTGGATACATTTCTATACTCTTCTATGCTTCCTGGTGTCGTTTTTCACGCAGAATGCTTCCTGAATTTGAGATTCTTAGTTCCATGTTTCCTCAAGTACAACATGTAGCACTTGAGCAATCTTCTGCTTTGCCCAGCTTATATTCAAAATATGGAATCCATAGCTTACCTGCAATCTTACTGGTGAACCAGACATCTAGGGTGAGATATCATGGTCCAAAAAATCTCAACTCCCTTGTAGAATTTTATGAGAGAAACACAGGATTAGAAGCCAAGGACAATGCTGTTGTTGGTCAACCGAGCAACTTTTTGAGTGATGAACATTCAACTATGAAGGGCTTCTCCCTCAAAGAAATATTTAACAGGGAACCTTACTTGGCATTATCTATATTGTTTCTCTGTTTAAGGATTATTCTCTTTGTATTTCCCACGATTATGCCACGCCTCAAAGCATTCTGGACTTCCTATGCTTCTCATTTGAACTTGCAAATATTTGGCCAAGTGATGGAACGTGTTCTTAATGTAATTGATGTCAAGAGGATTTGGACCAAGCTAAGACTATGCAAGACCAGGAACTTTCATGAAAGGGTGAGGAGCGCCCGGGTTTGGGCATCATCACTTGCTTCTGTTTCTCTTGGTGGCTCATCAGCTAGGTGA
Predicted protein sequences of Glyma19g28980
>Glyma19g28980.1   sequence type=predicted peptide   gene model=Glyma19g28980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATSLLFFITCLSLLPSSYCSPFPPSASFLYELQSQCSLAVSPDPPLRVDGNFIEGVLSGRKRVGYISILFYASWCRFSRRMLPEFEILSSMFPQVQHVALEQSSALPSLYSKYGIHSLPAILLVNQTSRVRYHGPKNLNSLVEFYERNTGLEAKDNAVVGQPSNFLSDEHSTMKGFSLKEIFNREPYLALSILFLCLRIILFVFPTIMPRLKAFWTSYASHLNLQIFGQVMERVLNVIDVKRIWTKLRLCKTRNFHERVRSARVWASSLASVSLGGSSAR*






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