Glyma19g28970 - SoyBase

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Report for Sequence Feature Glyma19g28970

Feature Type:	gene_model
Chromosome:	Gm19
Start:	36526470
stop:	36528469
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g28970

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G18130	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03870.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). \| chr5:5995634-5997165 FORWARD LENGTH=280	SoyBase	E_val: 4.00E-28	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009617	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to bacterium	SoyBase	N/A	ISS
GO:0045087	GO-bp	Annotation by Michelle Graham. GO Biological Process: innate immune response	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_C6TK72	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TK72_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9FK57	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Gb\|AAF00631.1 n=1 Tax=Arabidopsis thaliana RepID=Q9FK57_ARATH	SoyBase	E_val: 2.00E-25	ISS

Expression Patterns of Glyma19g28970

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g28970

Paralog	Evidence	Comments
Glyma16g04440	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g28970 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g112800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g28970

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g28970

Limit To All Plant Sequences

>Glyma19g28970.1   sequence type=CDS   gene model=Glyma19g28970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACACCAATGACTGGGAATTCCTTTCTTATGATAGCCTTTATGATGCGTCCTTAGATTCAAAAAGTGTTCTTGATTTGGATGACTATGACTTGTGCACCTCACCAAAATTCAAGAAAGCCTCAGAAGCATCAAGGAATTTTCATCCAAGGGAACCAAAACAGGTTATCCATATTCCAATTCAATTGGAACCAAGAATTGGGAAGGCCCCAGATGAAGGGCTAGTGGAACAAAACACTAAGGATCATCATGTTGAGGTCCCTCTTGTCCCATCATCACCAACTACCATTGAGAAAATCAAAGGAGGGATTTTGGAAGCTGATTATGACACTGTTGCACACCTTTTCTCCAAGATCAAGGAAATTGAGTCTCCAAGGTCTATTGGTAGAGGATTGTTGTTCCCTTCACCTGATATAGGTGCTTTGAAATTTGAGGACAAAGGTGGTGAGGCACAAGAGATCATCATGGCCTCTCCAAGAATGAAGATTGAGAAAGAAATTGCTACTATTATGGACTGTGGCAAAGAAGTGGGGGACTCTAGTGGTGGTTTCAACTTTTGGAAGTGGAGCTTGAATGGTGTTGGGGCTATATGTTCTTTTGGATTTGCTGCTGCCACAATCTGTGTCCTAATTCTTGGAAGCCAGCAAAGGAACAACAAAATCCAGCAGGATCAGAAGATTCGGTTCCAGATCTATACTGATGACAAGAGGATTAAGCAAGTGGTTCATGCAACCAAATTGAATGAAGCAATGGCAGCAGCGAGTGGTGTTCCTCTGAGTAGAGCTCGCATAACCTGTGGTGGTTACTATGATGGCCTTTGA

Predicted protein sequences of Glyma19g28970

Limit To All Plant Sequences

>Glyma19g28970.1   sequence type=predicted peptide   gene model=Glyma19g28970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDTNDWEFLSYDSLYDASLDSKSVLDLDDYDLCTSPKFKKASEASRNFHPREPKQVIHIPIQLEPRIGKAPDEGLVEQNTKDHHVEVPLVPSSPTTIEKIKGGILEADYDTVAHLFSKIKEIESPRSIGRGLLFPSPDIGALKFEDKGGEAQEIIMASPRMKIEKEIATIMDCGKEVGDSSGGFNFWKWSLNGVGAICSFGFAAATICVLILGSQQRNNKIQQDQKIRFQIYTDDKRIKQVVHATKLNEAMAAASGVPLSRARITCGGYYDGL*

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