Glyma19g28920 - SoyBase

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Report for Sequence Feature Glyma19g28920

Feature Type:	gene_model
Chromosome:	Gm19
Start:	36478990
stop:	36484388
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g28920

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G03890	AT	Annotation by Michelle Graham. TAIR10: FMN binding \| chr3:999667-1001996 REVERSE LENGTH=321	SoyBase	E_val: 4.00E-148	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0004733	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pyridoxamine-phosphate oxidase activity	SoyBase	N/A	ISS
GO:0010181	GO-mf	Annotation by Michelle Graham. GO Molecular Function: FMN binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
KOG3374	KOG	Cellular repressor of transcription	JGI		ISS
PTHR13343	Panther	CREG1 PROTEIN	JGI		ISS
PTHR13343:SF4	Panther	gb def: cellular repressor of e1a-stimulated genes [drosophila melanogaster]	JGI		ISS
PF01243	PFAM	Pyridoxamine 5'-phosphate oxidase	JGI		ISS
PF10615	PFAM	Protein of unknown function (DUF2470)	JGI		ISS
UniRef100_C6TD66	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TD66_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9M7D2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Root border cell-specific protein n=1 Tax=Pisum sativum RepID=Q9M7D2_PEA	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g28920

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g28920

Paralog	Evidence	Comments
Glyma16g04520	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g28920 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g112500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g28920

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g28920

Limit To All Plant Sequences

>Glyma19g28920.2   sequence type=transcript   gene model=Glyma19g28920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGGTATTTTTCGGTGTTTGCTTTAGAAGGGGAGAGTTTGGTCTACACACACCACCACATGAAGAGCATGGTGACGCCATTGACGAGGGTCTTACCCTTTCGTCACCCAAATGGCCATAATACCCTTCCATTTTCTCTTACACGCTACCCTTCTTCACCAAACTTCTCCTTCTCCCCTCTCACTCTCACTCTTTCCATGGCTGCTTCACCCCAATCCTCCGCTCCAACTGTGTCGCCTGGTGATGTTAACATCGACAAAGATGGTGTATTTCAATTGATTCAAGCTCATCAGGAAAAAGCTGCTAGACTTCCACCAGTTGAGGAGATTCGAACTGTCCTTGATCGTAGCGTGCGCGGGATGCTCTCTACATTCTCAAAGAAGTTTGATGGTTATCCATCAGGGTCTATGGTTGACTTTGCATGTGATTCAAATGGATATCCTATATTAGCAGTGAGCGACTTGGCAGTTCATTCAAAGGACCTAACTGCCAATCCTAAATGTTCATTGCTTGTGGCTAGAGATCCTGAAGATAGGACTGATTTAGTGATTACTGTACATGGTGATGCTATCTCTGTTCCTGAAAATGAAAGAGAAGCCGTTCGAGCTGCATATTTGGCGAGGCATCCCAATGCATTTTGGGTTGACTTTGGAGACTTCCAATTCTTGCGCATTGAACCGAAAGTTGTACGATTTGTGTCAGGTGTTGCCACAGCTTTGTTAGGATCAGGAGAGTTTAGTGGAGATGAGTATAAATCTGCAAAAGTTGATCCCATAGCTCAGTTTTCCAAGCCAGTGGCGTCTCATATGAACAAAGATCATGCTGAAGATAACAAAGTGATTGTGCAGCATTGGACCTCAGTTCCAGTGGACTTTGCCTTCATACTAGATTTGGATAGTCTTGGTTTCAATGTTAAGGCTGGTTATCAGGGTGATACTTTCAAGCTTCGTGTACCTTTCCCTCGATGTGCAGAAGATAGAAAGGATGTGAAGACTCTCATTGTTGAGATGCTTCAAGCTGCTAGGCCTAAAGTTGATTGATCACTTCACAGATCAATGATGAACAGCACCTGCCATCCTTCTTGGGGAGAGGACAAAATGTA

Coding sequences of Glyma19g28920

Limit To All Plant Sequences

>Glyma19g28920.1   sequence type=CDS   gene model=Glyma19g28920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAGCATGGTGACGCCATTGACGAGGGTCTTACCCTTTCGTCACCCAAATGGCCATAATACCCTTCCATTTTCTCTTACACGCTACCCTTCTTCACCAAACTTCTCCTTCTCCCCTCTCACTCTCACTCTTTCCATGGCTGCTTCACCCCAATCCTCCGCTCCAACTGTGTCGCCTGGTGATGTTAACATCGACAAAGATGGTGTATTTCAATTGATTCAAGCTCATCAGGAAAAAGCTGCTAGACTTCCACCAGTTGAGGAGATTCGAACTGTCCTTGATCGTAGCGTGCGCGGGATGCTCTCTACATTCTCAAAGAAGTTTGATGGTTATCCATCAGGGTCTATGGTTGACTTTGCATGTGATTCAAATGGATATCCTATATTAGCAGTGAGCGACTTGGCAGTTCATTCAAAGGACCTAACTGCCAATCCTAAATGTTCATTGCTTGTGGCTAGAGATCCTGAAGATAGGACTGATTTAGTGATTACTGTACATGGTGATGCTATCTCTGTTCCTGAAAATGAAAGAGAAGCCGTTCGAGCTGCATATTTGGCGAGGCATCCCAATGCATTTTGGGTTGACTTTGGAGACTTCCAATTCTTGCGCATTGAACCGAAAGTTGTACGATTTGTGTCAGGTGTTGCCACAGCTTTGTTAGGATCAGGAGAGTTTAGTGGAGATGAGTATAAATCTGCAAAAGTTGATCCCATAGCTCAGTTTTCCAAGCCAGTGGCGTCTCATATGAACAAAGATCATGCTGAAGATAACAAAGTGATTGTGCAGCATTGGACCTCAGTTCCAGTGGACTTTGCCTTCATACTAGATTTGGATAGTCTTGGTTTCAATGTTAAGGCTGGTTATCAGGGTGATACTTTCAAGCTTCGTGTACCTTTCCCTCGATGTGCAGAAGATAGAAAGGATGTGAAGACTCTCATTGTTGAGATGCTTCAAGCTGCTAGGCCTAAAGTTGATTGA

>Glyma19g28920.2   sequence type=CDS   gene model=Glyma19g28920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAGCATGGTGACGCCATTGACGAGGGTCTTACCCTTTCGTCACCCAAATGGCCATAATACCCTTCCATTTTCTCTTACACGCTACCCTTCTTCACCAAACTTCTCCTTCTCCCCTCTCACTCTCACTCTTTCCATGGCTGCTTCACCCCAATCCTCCGCTCCAACTGTGTCGCCTGGTGATGTTAACATCGACAAAGATGGTGTATTTCAATTGATTCAAGCTCATCAGGAAAAAGCTGCTAGACTTCCACCAGTTGAGGAGATTCGAACTGTCCTTGATCGTAGCGTGCGCGGGATGCTCTCTACATTCTCAAAGAAGTTTGATGGTTATCCATCAGGGTCTATGGTTGACTTTGCATGTGATTCAAATGGATATCCTATATTAGCAGTGAGCGACTTGGCAGTTCATTCAAAGGACCTAACTGCCAATCCTAAATGTTCATTGCTTGTGGCTAGAGATCCTGAAGATAGGACTGATTTAGTGATTACTGTACATGGTGATGCTATCTCTGTTCCTGAAAATGAAAGAGAAGCCGTTCGAGCTGCATATTTGGCGAGGCATCCCAATGCATTTTGGGTTGACTTTGGAGACTTCCAATTCTTGCGCATTGAACCGAAAGTTGTACGATTTGTGTCAGGTGTTGCCACAGCTTTGTTAGGATCAGGAGAGTTTAGTGGAGATGAGTATAAATCTGCAAAAGTTGATCCCATAGCTCAGTTTTCCAAGCCAGTGGCGTCTCATATGAACAAAGATCATGCTGAAGATAACAAAGTGATTGTGCAGCATTGGACCTCAGTTCCAGTGGACTTTGCCTTCATACTAGATTTGGATAGTCTTGGTTTCAATGTTAAGGCTGGTTATCAGGGTGATACTTTCAAGCTTCGTGTACCTTTCCCTCGATGTGCAGAAGATAGAAAGGATGTGAAGACTCTCATTGTTGAGATGCTTCAAGCTGCTAGGCCTAAAGTTGATTGA

Predicted protein sequences of Glyma19g28920

Limit To All Plant Sequences

>Glyma19g28920.1   sequence type=predicted peptide   gene model=Glyma19g28920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKSMVTPLTRVLPFRHPNGHNTLPFSLTRYPSSPNFSFSPLTLTLSMAASPQSSAPTVSPGDVNIDKDGVFQLIQAHQEKAARLPPVEEIRTVLDRSVRGMLSTFSKKFDGYPSGSMVDFACDSNGYPILAVSDLAVHSKDLTANPKCSLLVARDPEDRTDLVITVHGDAISVPENEREAVRAAYLARHPNAFWVDFGDFQFLRIEPKVVRFVSGVATALLGSGEFSGDEYKSAKVDPIAQFSKPVASHMNKDHAEDNKVIVQHWTSVPVDFAFILDLDSLGFNVKAGYQGDTFKLRVPFPRCAEDRKDVKTLIVEMLQAARPKVD*

>Glyma19g28920.2   sequence type=predicted peptide   gene model=Glyma19g28920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKSMVTPLTRVLPFRHPNGHNTLPFSLTRYPSSPNFSFSPLTLTLSMAASPQSSAPTVSPGDVNIDKDGVFQLIQAHQEKAARLPPVEEIRTVLDRSVRGMLSTFSKKFDGYPSGSMVDFACDSNGYPILAVSDLAVHSKDLTANPKCSLLVARDPEDRTDLVITVHGDAISVPENEREAVRAAYLARHPNAFWVDFGDFQFLRIEPKVVRFVSGVATALLGSGEFSGDEYKSAKVDPIAQFSKPVASHMNKDHAEDNKVIVQHWTSVPVDFAFILDLDSLGFNVKAGYQGDTFKLRVPFPRCAEDRKDVKTLIVEMLQAARPKVD*

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