Glyma19g28900 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma19g28900): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma19g28900): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma19g28900

Feature Type:	gene_model
Chromosome:	Gm19
Start:	36454532
stop:	36460276
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g28900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G03900	AT	Annotation by Michelle Graham. TAIR10: adenosine-5'-phosphosulfate (APS) kinase 3 \| chr3:1002975-1004271 REVERSE LENGTH=208	SoyBase	E_val: 2.00E-127	ISS
GO:0000103	GO-bp	Annotation by Michelle Graham. GO Biological Process: sulfate assimilation	SoyBase	N/A	ISS
GO:0048232	GO-bp	Annotation by Michelle Graham. GO Biological Process: male gamete generation	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0004020	GO-mf	Annotation by Michelle Graham. GO Molecular Function: adenylylsulfate kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG0635	KOG	Adenosine 5'-phosphosulfate kinase	JGI		ISS
PTHR11055	Panther	ADENYLSULFATE KINASE/SULFATE ADENYLTRANSFERASE	JGI		ISS
PF01583	PFAM	Adenylylsulphate kinase	JGI		ISS
UniRef100_I1N888	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Adenylyl-sulfate kinase n=1 Tax=Glycine max RepID=I1N888_SOYBN	SoyBase	E_val: 5.00E-152	ISS
UniRef100_I1N888	UniRef	Annotation by Michelle Graham. Best UniRef hit: Adenylyl-sulfate kinase n=1 Tax=Glycine max RepID=I1N888_SOYBN	SoyBase	E_val: 5.00E-152	ISS

Expression Patterns of Glyma19g28900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g28900 not represented in the dataset	Glyma19g28900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g28900

Paralog	Evidence	Comments
Glyma16g04530	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g28900 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g112200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g28900

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g28900

Limit To All Plant Sequences

>Glyma19g28900.5   sequence type=transcript   gene model=Glyma19g28900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTCCGAATGACATATGGCCATGAAAGGAAACGAGGGAGTTCAAGAGAGAGAGAAATTCATTCATTCATTGCCATTGGTTTCCTCGAACAACCTCAAAGTTTCAAATCCAGAAAAGAAAATAAAACCACCTTCATTCCCATCCTTTCTTTCTGTCAAATTTTACATTAAATTACATGACATGGCATAACACACACCACACCACCCTCTCTTTATATATCACACCCTACCCCTCAGATTCAGACACCCAGTTGCTTCCTTTTATTCCTGTAATCCATGAAATAAAATTGCTAGCTTAATAGTGATCCGTATAGAAGACTAGGGAACTTGTTTGCTATGGCAACTCTGAGCAATTCAACTAATATCTTTTGGCAAGATTGTCAAATAGGAAGGCCTGAAAGGCAGAAGCTACTTAACCAAAAGGGATGTGTTGTATGGATTACTGGACTCAGCGGATCAGGAAAAAGCACATTGGCATGCTCCCTAAGCAGAGAACTGCACTCAAGGGGAAAGTTATCTTATGTCCTTGATGGAGATAACCTTCGGCATGGACTAAACAAGGATCTTGGTTTTAAAGCTGAAGATCGCACTGAAAATATTCGCAGAACTGGAGAAGTGGCAAAACTCTTCGCTGATGCTGGTTTAATATGTGTTGCTAGTCTGATATCTCCTTACAGAAGAGATCGAGACACTTGCCGTGCCATGTTACCTGATGCAAATTTTATTGAGGTTTTCATGAACATGCCTCTAGAATTGTGCGAGGCACGAGATCCAAAAGGCCTCTATAAGCTTGCTCGTGCAGGGAAAATCAAAGGTTTTACCGGCATTGATGATCCTTATGAACCGCCCATAAATTGTGAGATTGAAATAAAGCAGGAAAATGGGAATTGTCCAACACCTACTATGATGGCTGGACAAGTAGTTACTTACTTGGAGAATAAAGGATTTCTTGAATCTTAGAGTTTTTAAGTTTAATTATTCTCTAATAATGGTGTTTCTTCTAAATGAAGTTAAAAAGGAATCCTAGGAAGTGCAGGTAGGAGAGTGGTGAGAGGATAAATGGACTTGTAAAGTTCATCAAGTATAAATAATAATTAATAATTGTTGCAATTCATTCTATAGGTTGATCAAGAATTTCAGTATATTTATCGGCGTTTGATATGATTGTTTTCTTCGCATTGCTGATCATTATGGTCCTAGGAAATTCAATTACAAAGGCTGTGACATATATTCATATGCTTCTCCGTTAATTGTGTACTTTCGTATGTCAACCG

>Glyma19g28900.6   sequence type=transcript   gene model=Glyma19g28900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAACGAGGGAGTTCAAGAGAGAGAGAAATTCATTCATTCATTGCCATTGGTTTCCTCGAACAACCTCAAAGTTTCAAATCCAGAAAAGAAAATAAAACCACCTTCATTCCCATCCTTTCTTTCTGTCAAATTTTACATTAAATTACATGACATGGCATAACACACACCACACCACCCTCTCTTTATATATCACACCCTACCCCTCAGATTCAGACACCCAGTTGCTTCCTTTTATTCCTGAATCGTGTGCTGACAGTCAAGAATAGTAGAGGATCCAAATCCATAGAAGGGGGTTTTATGACTCATCCTAAACTTTATGGAAACCTTTAATGTGTACAATGTATGTAGACGCTATTTATGTCAAAGAGGTCATGCTTCTTTTTTACACAAACAAGTGTAAGTGAGTGATGAGATCACCATTCCACTGTCTGAAGTTGATGCATGTTGTCATGCTTTCAGTTCTGTGGCCTGTACTGCTGTTGTAATGCTTGCCCTGATGAAGCACTTACCAAGTTTCTGGCACGGTTGTATTACTTTCATGCACTTCTATTCTAAGATTCTCTTTTATGTTTTGATCCTGCAGTAATCCATGAAATAAAATTGCTAGCTTAATAGTGATCCGTATAGAAGACTAGGGAACTTGTTTGCTATGGCAACTCTGAGCAATTCAACTAATATCTTTTGGCAAGATTGTCAAATAGGAAGGCCTGAAAGGCAGAAGCTACTTAACCAAAAGGGATGTGTTGTATGGATTACTGGACTCAGCGGATCAGGAAAAAGCACATTGGCATGCTCCCTAAGCAGAGAACTGCACTCAAGGGGAAAGTTATCTTATGTCCTTGATGGAGATAACCTTCGGCATGGACTAAACAAGGATCTTGGTTTTAAAGCTGAAGATCGCACTGAAAATATTCGCAGAACTGGAGAAGTGGCAAAACTCTTCGCTGATGCTGGTTTAATATGTGTTGCTAGTCTGATATCTCCTTACAGAAGAGATCGAGACACTTGCCGTGCCATGTTACCTGATGCAAATTTTATTGAGGTTTTCATGAACATGCCTCTAGAATTGTGCGAGGCACGAGATCCAAAAGGCCTCTATAAGCTTGCTCGTGCAGGGAAAATCAAAGGTTTTACCGGCATTGATGATCCTTATGAACCGCCCATAAATTGTGAGATTGAAATAAAGCAGGAAAATGGGAATTGTCCAACACCTACTATGATGGCTGGACAAGTAGTTACTTACTTGGAGAATAAAGGATTTCTTGAATCTTAGAGTTTTTAAGTTTAATTATTCTCTAATAATGGTGTTTCTTCTAAATGAAGTTAAAAAGGAATCCTAGGAAGTGCAGGTAGGAGAGTGGTGAGAGGATAAATGGACTTGTAAAGTTCATCAAGTATAAATAATAATTAATAATTGTTGCAATTCATTCTATAGGTTGATCAAGAATTTCAGTATATTTATCGGCGTTTGATATGATTGTTTTCTTCGCATTGCTGATCATTATGGTCCTAGGAAATTCAATTACAAAGGCTGTGACATATATTCATATGCTTCTCCGTTAATTGTGTACTTTCGTATGTCAACCG

Coding sequences of Glyma19g28900

Limit To All Plant Sequences

>Glyma19g28900.4   sequence type=CDS   gene model=Glyma19g28900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACTCTGAGCAATTCAACTAATATCTTTTGGCAAGATTGTCAAATAGGAAGGCCTGAAAGGCAGAAGCTACTTAACCAAAAGGGATGTGTTGTATGGATTACTGGACTCAGCGGATCAGGAAAAAGCACATTGGCATGCTCCCTAAGCAGAGAACTGCACTCAAGGGGAAAGTTATCTTATGTCCTTGATGGAGATAACCTTCGGCATGGACTAAACAAGGATCTTGGTTTTAAAGCTGAAGATCGCACTGAAAATATTCGCAGAACTGGAGAAGTGGCAAAACTCTTCGCTGATGCTGGTTTAATATGTGTTGCTAGTCTGATATCTCCTTACAGAAGAGATCGAGACACTTGCCGTGCCATGTTACCTGATGCAAATTTTATTGAGGTTTTCATGAACATGCCTCTAGAATTGTGCGAGGCACGAGATCCAAAAGGCCTCTATAAGCTTGCTCGTGCAGGGAAAATCAAAGGTTTTACCGGCATTGATGATCCTTATGAACCGCCCATAAATTGTGAGATTGAAATAAAGCAGGAAAATGGGAATTGTCCAACACCTACTATGATGGCTGGACAAGTAGTTACTTACTTGGAGAATAAAGGATTTCTTGAATCTTAG

>Glyma19g28900.5   sequence type=CDS   gene model=Glyma19g28900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACTCTGAGCAATTCAACTAATATCTTTTGGCAAGATTGTCAAATAGGAAGGCCTGAAAGGCAGAAGCTACTTAACCAAAAGGGATGTGTTGTATGGATTACTGGACTCAGCGGATCAGGAAAAAGCACATTGGCATGCTCCCTAAGCAGAGAACTGCACTCAAGGGGAAAGTTATCTTATGTCCTTGATGGAGATAACCTTCGGCATGGACTAAACAAGGATCTTGGTTTTAAAGCTGAAGATCGCACTGAAAATATTCGCAGAACTGGAGAAGTGGCAAAACTCTTCGCTGATGCTGGTTTAATATGTGTTGCTAGTCTGATATCTCCTTACAGAAGAGATCGAGACACTTGCCGTGCCATGTTACCTGATGCAAATTTTATTGAGGTTTTCATGAACATGCCTCTAGAATTGTGCGAGGCACGAGATCCAAAAGGCCTCTATAAGCTTGCTCGTGCAGGGAAAATCAAAGGTTTTACCGGCATTGATGATCCTTATGAACCGCCCATAAATTGTGAGATTGAAATAAAGCAGGAAAATGGGAATTGTCCAACACCTACTATGATGGCTGGACAAGTAGTTACTTACTTGGAGAATAAAGGATTTCTTGAATCTTAG

>Glyma19g28900.6   sequence type=CDS   gene model=Glyma19g28900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACTCTGAGCAATTCAACTAATATCTTTTGGCAAGATTGTCAAATAGGAAGGCCTGAAAGGCAGAAGCTACTTAACCAAAAGGGATGTGTTGTATGGATTACTGGACTCAGCGGATCAGGAAAAAGCACATTGGCATGCTCCCTAAGCAGAGAACTGCACTCAAGGGGAAAGTTATCTTATGTCCTTGATGGAGATAACCTTCGGCATGGACTAAACAAGGATCTTGGTTTTAAAGCTGAAGATCGCACTGAAAATATTCGCAGAACTGGAGAAGTGGCAAAACTCTTCGCTGATGCTGGTTTAATATGTGTTGCTAGTCTGATATCTCCTTACAGAAGAGATCGAGACACTTGCCGTGCCATGTTACCTGATGCAAATTTTATTGAGGTTTTCATGAACATGCCTCTAGAATTGTGCGAGGCACGAGATCCAAAAGGCCTCTATAAGCTTGCTCGTGCAGGGAAAATCAAAGGTTTTACCGGCATTGATGATCCTTATGAACCGCCCATAAATTGTGAGATTGAAATAAAGCAGGAAAATGGGAATTGTCCAACACCTACTATGATGGCTGGACAAGTAGTTACTTACTTGGAGAATAAAGGATTTCTTGAATCTTAG

Predicted protein sequences of Glyma19g28900

Limit To All Plant Sequences

>Glyma19g28900.4   sequence type=predicted peptide   gene model=Glyma19g28900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATLSNSTNIFWQDCQIGRPERQKLLNQKGCVVWITGLSGSGKSTLACSLSRELHSRGKLSYVLDGDNLRHGLNKDLGFKAEDRTENIRRTGEVAKLFADAGLICVASLISPYRRDRDTCRAMLPDANFIEVFMNMPLELCEARDPKGLYKLARAGKIKGFTGIDDPYEPPINCEIEIKQENGNCPTPTMMAGQVVTYLENKGFLES*

>Glyma19g28900.5   sequence type=predicted peptide   gene model=Glyma19g28900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATLSNSTNIFWQDCQIGRPERQKLLNQKGCVVWITGLSGSGKSTLACSLSRELHSRGKLSYVLDGDNLRHGLNKDLGFKAEDRTENIRRTGEVAKLFADAGLICVASLISPYRRDRDTCRAMLPDANFIEVFMNMPLELCEARDPKGLYKLARAGKIKGFTGIDDPYEPPINCEIEIKQENGNCPTPTMMAGQVVTYLENKGFLES*

>Glyma19g28900.6   sequence type=predicted peptide   gene model=Glyma19g28900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATLSNSTNIFWQDCQIGRPERQKLLNQKGCVVWITGLSGSGKSTLACSLSRELHSRGKLSYVLDGDNLRHGLNKDLGFKAEDRTENIRRTGEVAKLFADAGLICVASLISPYRRDRDTCRAMLPDANFIEVFMNMPLELCEARDPKGLYKLARAGKIKGFTGIDDPYEPPINCEIEIKQENGNCPTPTMMAGQVVTYLENKGFLES*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain