Glyma19g28830 - SoyBase

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Report for Sequence Feature Glyma19g28830

Feature Type:	gene_model
Chromosome:	Gm19
Start:	36402952
stop:	36406530
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g28830

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G22980	AT	Annotation by Michelle Graham. TAIR10: Ribosomal protein S5/Elongation factor G/III/V family protein \| chr3:8160269-8163316 REVERSE LENGTH=1015	SoyBase	E_val: 0	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003924	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTPase activity	SoyBase	N/A	ISS
GO:0005525	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP binding	SoyBase	N/A	ISS
GO:0008135	GO-mf	Annotation by Michelle Graham. GO Molecular Function: translation factor activity, nucleic acid binding	SoyBase	N/A	ISS
KOG0467	KOG	Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins	JGI		ISS
PTHR23115	Panther	TRANSLATION FACTOR	JGI		ISS
PTHR23115:SF3	Panther	TRANSLATION ELONGATION FACTOR	JGI		ISS
PF00009	PFAM	Elongation factor Tu GTP binding domain	JGI		ISS
PF00679	PFAM	Elongation factor G C-terminus	JGI		ISS
PF03144	PFAM	Elongation factor Tu domain 2	JGI		ISS
UniRef100_G7JKA7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Elongation factor EF-2 n=1 Tax=Medicago truncatula RepID=G7JKA7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E89F	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E89F related cluster n=1 Tax=unknown RepID=UPI000233E89F	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g28830

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g28830 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g111600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g28830

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g28830

Limit To All Plant Sequences

>Glyma19g28830.2   sequence type=CDS   gene model=Glyma19g28830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAGGAAAGTTCCAATTGCATCGACAACGAGAGGGATCTCATCCGCAACATCTGCATCCTAGCGCACGTCGACCACGGCAAGACCACCCTCGCCGACCACCTCATCGCCGCCGCGGGCGGCGGCGTCGTCCACCCAAAGCTCGCCGGCCGCGTCCGCTTCATGGACTACCTGGACGAGGAGCAGCGCCGCGCCATCACGATGAAGAGCTCCTCCATCCTCCTCCGCTATGCCGGCCGCTACGCGGTGAACCTCATCGACTCCCCCGGCCACATCGACTTCTGCAGCGAGGTCTCCACCGCCGCCCGACTCAGCGACGGCGCCCTCCTCCTCGTCGACGCCGTCGAAGGCGTCCACATCCAGACCCACGCCGTCCTCCGCCAGTGCTGGATCGAGCGCCTCACCCCCTGCCTCGTCCTCAACAAACTCGACCGCTTAATCACCGAGCTCAAACTTACCCCCTCTGAGGCCTACACGCGCCTCTTACGAATCGTTCACGAGGTCAACGGAATAGTCAGCGCTTATAAATCCGAAAAGTATCTCACCGACGTGGATTCCCTCCTCGCCGGAACCGGCAACGGCACCACCACCGGCGAGACCCTCGAGGACTACGATGATAACGAGGATGTTTTTCAGCCGCAGAAAGGTAATGTTATATTCGCATGCGCTTTAGATGGTTGGGGATTTGGGATTCGTGAGTTTGCGGAGATTTATGCTTCTAAGCTTGGGGCGAGTGTGAATGCCTTGCTGAGGGCGTTGTGGGGACAGAGGTATTATAACCCTAAGACGAAGATGATTGTTGGGAAGAAAGGGGTTGGGGGGAATAAGAAGCCTATGTTTGTTCAGTTTGTGTTGGAGCCCTTGTGGCAGGTGTATCAGGGGGCCTTGGAAGGGGATAAGGGGCTGGTGGAGAAGGTTATTAGGACCTTTAGTTTGTCGGTGCCGCAGCGGGAGCTGCAGAACAAGGATGTCAAGGTTGTGCTGCAGGCGGTTATGAGCCGCTGGCTTCCGCTTTCGGAGGCGGTTTTGTCCATGGTGGTTAGGTGTTTGCCGGACCCGGTGACGGCGCAGGCATTTAGGATATCCAGGTTGATTCCCAAGAAGGAGGTTATTGGGGATGTGGAGGGGGTTGAGGGTTTGGTGGAGGAGGCGGAGTTGGCGAGGAATTCGGTGGAGGAGTGTGATTGTCGGGACGAGGCTCCTTGTGTGGCTTTTGTGTCCAAGATGTTTGCTGTTCCGGTTAAGATGCTGCCTGGACACAGGGTGGAGGTTGGCAATGGTTATGGTGATGAAGGAGAGAGTGAGTCGGATGAGTGTTTTTTGGCGTTTGCTAGGATTTTTAGTGGGGTTTTGCATGCTGGGCAGAGAATTTTTGTGCTTTCTGCATTGTATGATCCGGTGAAAGGGGAGTCGATGCAGAAGCATATTCAGGAGGCTGAGTTGAAATCCCTGTATTTGATGATGGGGCAAGGGTTGAAAGTAGTGACATCTGCCAGGGCTGGGAATATTGTTGCCATTGCAGGCCTTGGGCAGCATATATTGAAGAGTGCTACTCTTTCTTCTACTAAGAACTGTTGGCCTTTTTCGAGTATGGCATTCCAAGTTGCTCCAACTTTGAGAGTTGCAATTGAGCCGTCTGATCCTGCTGATGTGGGTGCATTGCTCAAAGGCTTGAGGCTTTTGAATCGAGCAGATCCGTTTGTTGAGGTCACCGTGTCTGGAAGGGGAGAGCATGTTCTTGCTGCTGCTGGGGAAGTTCATCTTGAGAGATGCATAAAGGATTTAAAGGAGAGGTTTGCCAAGGTAAGCTTGGAGGTCTCTCCGCCTCTCGTGTCCTACAAAGAAACCATTGAGGGAGACGTATTGAACGTGATGGAAAATTTGAAAGTTCTTAGCAGGAGATCATCAGATTATGTTGAAAAAACAACACCCAATGGAAGATGTGTTGTTCGGGTGCAGGTGATGAAACTTCTACCTTCTTTGACGAAGGTGCTCGATGAAAGCTCTGATTTACTTGGAGATATTATTGGAGTAAAGTCGGGGCAAAGACCGAGTATTCTTGAAAACGATAACCCAGTTGAAGTGCTAAAAAAACGCATATTGGATGCAGTGGAGGGTGATATTTTGAGCAGGAATGAAAATGACAAGGACCATGCTGAGAAATGTAAATTGAAGTGGCTAAAGATTTTGAGGAGGATATGGGCACTTGGACCAAGGCAAATTGGTCCGAACCTTCTCTTTACTCCTGATATTAAAGCACAAAGCACCAATAGCTCTGTCTTAATACGTGGTTCTCCTCGCATATCAGAAAGGCTGGGCTTTGTGGCCGATTCTAGTATCAATGACTCAGTTGATGAGACGTCTTCAAATGCAAACTCAGCTTTATACATGGATGCTGAGCACCTTGAGAGTAGTGTTATATCTGGTTTCCAATTGGCCACTTCAGCTGGACCCTTGTGTGATGAACCTATGTGGGGTTTGGCATTTGTCGTTGAGGCACGGTTATCTCCATTTCCAGGACAGCATGATGAATCTGAAACGCACCAACAATCGGAGCAGTACGGCATATTTGCAGGGCAGGTAATTGCAACTGTCAAAGATGCTTGTAGAGCAGCTGTGGTTCAGAATAAACCACGGCTGGTGGAAGCAATGTATTTTTGTGAATTGAATACACCTACTGAATATTTGGGTCCCATGTATGCTGTACTTTCCCGAAGACGGGCCCGAGTATTGAAGGAAGAGATGCAAGAAGGTTCCCCTTTCTTCACTGTGCATGCGTATCTTCCTGTTTCTGAGAGCTTTGGTTTTGCGGATGAGCTTAGAAGGTGGACTTCTGGTGCCGCAAGTGCACTTCTTGTCCTTAGCCACTGGGAAGCACTTCCTGAGGATCCTTTCTTTGTACCTAAAACGGAAGAGGAAATTGAAGAGTTTGGAGATGGTTCTAGTGTTCTTCCAAATACGGCAAGAAAATTGATTAATGCAGTCAGACGGCGTAAGGGCCTTCCTGTGGAGGAAAAGGTAGTGCAGCATGGAACAAAGCAGAGGACACTGGCTCGTAAAGTCTGA

Predicted protein sequences of Glyma19g28830

Limit To All Plant Sequences

>Glyma19g28830.2   sequence type=predicted peptide   gene model=Glyma19g28830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEESSNCIDNERDLIRNICILAHVDHGKTTLADHLIAAAGGGVVHPKLAGRVRFMDYLDEEQRRAITMKSSSILLRYAGRYAVNLIDSPGHIDFCSEVSTAARLSDGALLLVDAVEGVHIQTHAVLRQCWIERLTPCLVLNKLDRLITELKLTPSEAYTRLLRIVHEVNGIVSAYKSEKYLTDVDSLLAGTGNGTTTGETLEDYDDNEDVFQPQKGNVIFACALDGWGFGIREFAEIYASKLGASVNALLRALWGQRYYNPKTKMIVGKKGVGGNKKPMFVQFVLEPLWQVYQGALEGDKGLVEKVIRTFSLSVPQRELQNKDVKVVLQAVMSRWLPLSEAVLSMVVRCLPDPVTAQAFRISRLIPKKEVIGDVEGVEGLVEEAELARNSVEECDCRDEAPCVAFVSKMFAVPVKMLPGHRVEVGNGYGDEGESESDECFLAFARIFSGVLHAGQRIFVLSALYDPVKGESMQKHIQEAELKSLYLMMGQGLKVVTSARAGNIVAIAGLGQHILKSATLSSTKNCWPFSSMAFQVAPTLRVAIEPSDPADVGALLKGLRLLNRADPFVEVTVSGRGEHVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETIEGDVLNVMENLKVLSRRSSDYVEKTTPNGRCVVRVQVMKLLPSLTKVLDESSDLLGDIIGVKSGQRPSILENDNPVEVLKKRILDAVEGDILSRNENDKDHAEKCKLKWLKILRRIWALGPRQIGPNLLFTPDIKAQSTNSSVLIRGSPRISERLGFVADSSINDSVDETSSNANSALYMDAEHLESSVISGFQLATSAGPLCDEPMWGLAFVVEARLSPFPGQHDESETHQQSEQYGIFAGQVIATVKDACRAAVVQNKPRLVEAMYFCELNTPTEYLGPMYAVLSRRRARVLKEEMQEGSPFFTVHAYLPVSESFGFADELRRWTSGAASALLVLSHWEALPEDPFFVPKTEEEIEEFGDGSSVLPNTARKLINAVRRRKGLPVEEKVVQHGTKQRTLARKV*

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