Report for Sequence Feature Glyma19g28800
Feature Type: gene_model
Chromosome: Gm19
Start: 36392727
stop: 36402805
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g28800
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G51730 AT
Annotation by Michelle Graham. TAIR10: saposin B domain-containing protein | chr3:19186970-19188436 FORWARD LENGTH=213
SoyBase E_val: 5.00E-51 ISS
GO:0006629 GO-bp
Annotation by Michelle Graham. GO Biological Process: lipid metabolic process
SoyBase N/A ISS
GO:0006635 GO-bp
Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation
SoyBase N/A ISS
GO:0006816 GO-bp
Annotation by Michelle Graham. GO Biological Process: calcium ion transport
SoyBase N/A ISS
GO:0007030 GO-bp
Annotation by Michelle Graham. GO Biological Process: Golgi organization
SoyBase N/A ISS
GO:0009651 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to salt stress
SoyBase N/A ISS
GO:0016558 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix
SoyBase N/A ISS
GO:0005773 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: vacuole
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG1340
KOG
Prosaposin
JGI ISS
PTHR11480 Panther
SAPOSIN-RELATED
JGI ISS
PTHR11480:SF2 Panther
ECDYSONE DEPENDENT GLYCOPROTEIN
JGI ISS
PF03489 PFAM
Saposin-like type B, region 2
JGI ISS
PF05184 PFAM
Saposin-like type B, region 1
JGI ISS
UniRef100_G7KX29 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Saposin B domain-containing protein n=2 Tax=Medicago truncatula RepID=G7KX29_MEDTR
SoyBase E_val: 2.00E-94 ISS
UniRef100_I1L729 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L729_SOYBN
SoyBase E_val: 4.00E-138 ISS
Expression Patterns of Glyma19g28800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma19g28800
Paralog Evidence Comments
Glyma09g41350 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Glyma18g44441 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g28800 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
no correspondence Wm82.a1.v1.1 IGC Correspondences based on a combination of genome sequence coordinate overlap (fjoin) and sequence similarity (ungapped blastn)
References for Glyma19g28800
Coding sequences of Glyma19g28800
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g28800.2 sequence type=CDS gene model=Glyma19g28800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAAGGGAGAACGGGACTCTTGTTTCTTGTTGTATTAGGTGCTGCTTGGGCATGTGATTCAAAGGAACTGACTAACTCTGGCACTTCCGAACTAAGCATAAAACCGGATGTGTGTGCACTTTGTGAGGAATATATTACCAAGGCACTTGATTATCTACATGAAAACAAGACCGAGACAGAGATCATTAATATCCTGCACAACACTTGCCACCAGCTTCCCTCTTTCATGCAGAAGTGTGTTGCTTTGGTGGACTTTTATGCTCCTCTTTTCTTCTCTGAAGTAGCTACAATTCAGCCTGGAGAATTCTGCCACAAGGTCAATCTCTGTCAGAACATTGCATATATTGGCTTGAAAGTTCAAGATGATAGCTGTGAGTTTTGCCAAGATACTGTTTCAACTCTATTGGAAAAGTTGAAGGAGACTGATACTAAGCTAGAGATAATTGAGACATCACTGAAGGTGTGTAATTCAGTGGAGAAGTATGCAAATAAGTGCAAGAGAATGGTTTTGGAGTATGGACCATTGGTTTTTGACAATGCAGAGAAATTCCTGGAGAGCACAGATATATGGGCTGCCATATATGCCATGCAAATCTTCAACAGTGGCTGGCCAGCAAACCTTTCTTTCAGATTCTTATGGAAACAACGTTCTAACAGATTTGTGGTGTACTTGCTGCAGAAGATTGCCATATATATAACAACACAATGA
Predicted protein sequences of Glyma19g28800
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g28800.2 sequence type=predicted peptide gene model=Glyma19g28800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEGRTGLLFLVVLGAAWACDSKELTNSGTSELSIKPDVCALCEEYITKALDYLHENKTETEIINILHNTCHQLPSFMQKCVALVDFYAPLFFSEVATIQPGEFCHKVNLCQNIAYIGLKVQDDSCEFCQDTVSTLLEKLKETDTKLEIIETSLKVCNSVEKYANKCKRMVLEYGPLVFDNAEKFLESTDIWAAIYAMQIFNSGWPANLSFRFLWKQRSNRFVVYLLQKIAIYITTQ*