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Report for Sequence Feature Glyma19g28800

Feature Type:gene_model
Chromosome:Gm19
Start:36392727
stop:36402805
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G51730AT Annotation by Michelle Graham. TAIR10: saposin B domain-containing protein | chr3:19186970-19188436 FORWARD LENGTH=213 SoyBaseE_val: 5.00E-51ISS
GO:0006629GO-bp Annotation by Michelle Graham. GO Biological Process: lipid metabolic process SoyBaseN/AISS
GO:0006635GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation SoyBaseN/AISS
GO:0006816GO-bp Annotation by Michelle Graham. GO Biological Process: calcium ion transport SoyBaseN/AISS
GO:0007030GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi organization SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0016558GO-bp Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG1340 KOG Prosaposin JGI ISS
PTHR11480Panther SAPOSIN-RELATED JGI ISS
PTHR11480:SF2Panther ECDYSONE DEPENDENT GLYCOPROTEIN JGI ISS
PF03489PFAM Saposin-like type B, region 2 JGI ISS
PF05184PFAM Saposin-like type B, region 1 JGI ISS
UniRef100_G7KX29UniRef Annotation by Michelle Graham. Most informative UniRef hit: Saposin B domain-containing protein n=2 Tax=Medicago truncatula RepID=G7KX29_MEDTR SoyBaseE_val: 2.00E-94ISS
UniRef100_I1L729UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L729_SOYBN SoyBaseE_val: 4.00E-138ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma09g41350 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Glyma18g44441 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
no correspondence Wm82.a1.v1.1IGC Correspondences based on a combination of genome sequence coordinate overlap (fjoin) and sequence similarity (ungapped blastn)

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g28800.2   sequence type=CDS   gene model=Glyma19g28800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGGAGAACGGGACTCTTGTTTCTTGTTGTATTAGGTGCTGCTTGGGCATGTGATTCAAAGGAACTGACTAACTCTGGCACTTCCGAACTAAGCATAAAACCGGATGTGTGTGCACTTTGTGAGGAATATATTACCAAGGCACTTGATTATCTACATGAAAACAAGACCGAGACAGAGATCATTAATATCCTGCACAACACTTGCCACCAGCTTCCCTCTTTCATGCAGAAGTGTGTTGCTTTGGTGGACTTTTATGCTCCTCTTTTCTTCTCTGAAGTAGCTACAATTCAGCCTGGAGAATTCTGCCACAAGGTCAATCTCTGTCAGAACATTGCATATATTGGCTTGAAAGTTCAAGATGATAGCTGTGAGTTTTGCCAAGATACTGTTTCAACTCTATTGGAAAAGTTGAAGGAGACTGATACTAAGCTAGAGATAATTGAGACATCACTGAAGGTGTGTAATTCAGTGGAGAAGTATGCAAATAAGTGCAAGAGAATGGTTTTGGAGTATGGACCATTGGTTTTTGACAATGCAGAGAAATTCCTGGAGAGCACAGATATATGGGCTGCCATATATGCCATGCAAATCTTCAACAGTGGCTGGCCAGCAAACCTTTCTTTCAGATTCTTATGGAAACAACGTTCTAACAGATTTGTGGTGTACTTGCTGCAGAAGATTGCCATATATATAACAACACAATGA

>Glyma19g28800.2   sequence type=predicted peptide   gene model=Glyma19g28800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGRTGLLFLVVLGAAWACDSKELTNSGTSELSIKPDVCALCEEYITKALDYLHENKTETEIINILHNTCHQLPSFMQKCVALVDFYAPLFFSEVATIQPGEFCHKVNLCQNIAYIGLKVQDDSCEFCQDTVSTLLEKLKETDTKLEIIETSLKVCNSVEKYANKCKRMVLEYGPLVFDNAEKFLESTDIWAAIYAMQIFNSGWPANLSFRFLWKQRSNRFVVYLLQKIAIYITTQ*







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