Glyma19g28790 - SoyBase

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Report for Sequence Feature Glyma19g28790

Feature Type:	gene_model
Chromosome:	Gm19
Start:	36374740
stop:	36376105
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g28790

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G58380	AT	Annotation by Michelle Graham. TAIR10: SOS3-interacting protein 1 \| chr5:23597092-23598531 REVERSE LENGTH=479	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG0583	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24343	Panther	SERINE/THREONINE KINASE	JGI		ISS
PTHR24343:SF45	Panther	SERINE/THREONINE-PROTEIN KINASE PTK1,2/STK1,2	JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
PF03822	PFAM	NAF domain	JGI		ISS
UniRef100_A0MNK8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CBL-interacting protein kinase 22 n=2 Tax=Populus trichocarpa RepID=A0MNK8_POPTR	SoyBase	E_val: 0	ISS
UniRef100_I1N881	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N881_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g28790

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g28790

Paralog	Evidence	Comments
Glyma09g41340	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Glyma18g44450	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g28790 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g111300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g28790

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g28790

Limit To All Plant Sequences

>Glyma19g28790.1   sequence type=CDS   gene model=Glyma19g28790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCAGAAGGGAAGTGTGCTTATGCAAAGATATGAACTTGGGAGATTATTAGGCCAAGGAACCTTTGCTAACGTCTACCATGCTAGGAACCTTATAACTGGCATGAGTATTAAGCGTGAAATTTCAGTGATGAGATTAATCAGACATCCACATGTGGTTGAGCTTTATGAGGTAATGGCCAGTAAAACCAAAATTTACTTTGTCATGGAGCATGCAAAAGGTGGTGAGCTCTTCAACAAGGTAGTCAAAGGAAGGCTCAAGGTGGATGTTGCTTGGAAATATTTTCAGCAACTGATTAGTGCAGTTGACTACTGCCATAGCAGGGGTGTGTGTCATCGAGATTTAAAACCCGAAAATCTACTATTGGATGAAAATGAGAATTTGAAGGTTTCTGACTTTGGGTTGAGTGCACTTGCTGAATCTAAGTGCCAAGATGGATTGCTCCATACTACATGTGATACCCCTGCCTATGTTGCTCCGGAAGTGATAAACAGAAAGGGCTATGATGGGATTAAAGCTGATATATATGGTCATGATACAAATCTGATGGAGATGTACAGGAAGATTGGTAGAGGGGAATTCAAATTTCCTAAATGGTTTGCACTGGATGTTCGCTGGTTTTTGTCCAGAATATTGGATCCAAACCCAAAGGCCAGGATATCAATGGCCAAGATTATGGAAAGTTCTTGGTTTAAAAAGGGGTTGGAGAAGCCTGCTATTACTGTAACCGAAAACGAAGAGCTAGCTCCCCTGGATGCTGATGGAATATTTGAAGCGTGTGAGAATGATGGTCCTATTGCCGAGCCTAAGCAAGAACAGGCCAAGCCTTGCAACTTAAATGCTTTTGATATTATCTCCTTCTCAACTGGTTTTGATTTATCTGGTTTGTTCGAGGACACTTTTCTCAAGAAAGAGACACGGTTTATGTCAAAGAAGCCTGCCTCAATCATAGTCTTGAAGTTGGAAGAAATTTGTAAGCAGCTTTGCTTGAAAGTAAAGAAGAAAGATCGAGGCTTGCTCAAATTGGAAGTTTCCAAGGAAGGCAGGAAAGGAACTTTGGGTGTTGATGCTGAGATTTTTGAGATTACCCCACACTTCCATATGGTGGAACTTAGAAAGTCCAATGGTGACACCATGGAGTACCAGAAGCTTTTTAAACAGGACATAAGACCAGCGCTTAAGGACATTGTTTGGACCTGGCAAGGAGAAAAACCACAGCAAGAGCAACAGCAACATGAAGTAGTCCAGGAAGAGCACCAACCTTCTCATACTGCTTAG

Predicted protein sequences of Glyma19g28790

Limit To All Plant Sequences

>Glyma19g28790.1   sequence type=predicted peptide   gene model=Glyma19g28790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEQKGSVLMQRYELGRLLGQGTFANVYHARNLITGMSIKREISVMRLIRHPHVVELYEVMASKTKIYFVMEHAKGGELFNKVVKGRLKVDVAWKYFQQLISAVDYCHSRGVCHRDLKPENLLLDENENLKVSDFGLSALAESKCQDGLLHTTCDTPAYVAPEVINRKGYDGIKADIYGHDTNLMEMYRKIGRGEFKFPKWFALDVRWFLSRILDPNPKARISMAKIMESSWFKKGLEKPAITVTENEELAPLDADGIFEACENDGPIAEPKQEQAKPCNLNAFDIISFSTGFDLSGLFEDTFLKKETRFMSKKPASIIVLKLEEICKQLCLKVKKKDRGLLKLEVSKEGRKGTLGVDAEIFEITPHFHMVELRKSNGDTMEYQKLFKQDIRPALKDIVWTWQGEKPQQEQQQHEVVQEEHQPSHTA*

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