Glyma19g28770 - SoyBase

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Report for Sequence Feature Glyma19g28770

Feature Type:	gene_model
Chromosome:	Gm19
Start:	36353512
stop:	36358058
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g28770

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G18170	AT	Annotation by Michelle Graham. TAIR10: glutamate dehydrogenase 1 \| chr5:6006172-6008248 FORWARD LENGTH=411	SoyBase	E_val: 0	ISS
GO:0006520	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular amino acid metabolic process	SoyBase	N/A	ISS
GO:0006807	GO-bp	Annotation by Michelle Graham. GO Biological Process: nitrogen compound metabolic process	SoyBase	N/A	ISS
GO:0009646	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to absence of light	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0004353	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glutamate dehydrogenase [NAD(P)+] activity	SoyBase	N/A	ISS
GO:0005507	GO-mf	Annotation by Michelle Graham. GO Molecular Function: copper ion binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0016639	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor	SoyBase	N/A	ISS
GO:0050897	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cobalt ion binding	SoyBase	N/A	ISS
KOG2250	KOG	Glutamate/leucine/phenylalanine/valine dehydrogenases	JGI		ISS
PTHR11606	Panther	GLUTAMATE DEHYDROGENASE	JGI		ISS
PF00208	PFAM	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase	JGI		ISS
PF02812	PFAM	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain	JGI		ISS
UniRef100_C6TDZ0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glutamate dehydrogenase n=1 Tax=Glycine max RepID=C6TDZ0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_C6TDZ0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Glutamate dehydrogenase n=1 Tax=Glycine max RepID=C6TDZ0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g28770

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g28770

Paralog	Evidence	Comments
Glyma16g04560	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g28770 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g111000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g28770

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g28770

Limit To All Plant Sequences

>Glyma19g28770.2   sequence type=transcript   gene model=Glyma19g28770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGATTTCTGTAATTATTTTTCTTCTAGGAGATGTGAAAGAAGCTAGAACACAAGACAGTAGTCAAGGGGAACAATGAATGCACTAGCAGCCACCAACAGGAACTTTAAGTTGGCCTCTAGGCTTCTGGGATTGGATTCAAAGCTTGAGAAAAGTTTGCTGATTCCATTCAGGGAAATCAAGGTTGAATGTACCATACCTAAAGATGATGGCACGTTGCAATCTTATGTTGGGTTCAGGGTTCAACATGATAATGCCAGAGGCCCCATGAAAGGAGGAATCAGATACCATCCTGAGGTTGACCCTGATGAAGTGAATGCTTTAGCACAACTAATGACATGGAAAACAGCTGTAGCAAATATACCATATGGTGGTGCCAAAGGAGGGATAGGGTGTGACCCAGCAGAATTAAGTATATCTGAGTTAGAAAGACTTACTAGAGTTTTTACACAAAAAATTCATGATTTGATTGGAACTCACACAGATGTGCCAGCACCTGATATGGGAACAGGGCCACAGACCATGGCATGGATACTAGATGAGTATTCCAAATTCCACGGTTACTCTCCTGCAGTAGTGACTGGAAAACCTATAGATCTTGGTGGATCTCTAGGTAGAGACGCGGCTACAGGACGGGGAGTCCTCTTTGCAACAGAGGCTTTGCTTAATGAGTATGGGAAGAGTGTATCTGGACAACGGTTTGTCATACAGGGTTTTGGAAATGTAGGGTCATGGGCTGCCCAATTAATTAGTGAGAAAGGTGGAAAAGTTGTAGCTGTGAGTGACATAACTGGAGCCATAAAGAACAGCAATGGTCTTGACATCCCAAACCTTCTTGAGCATTCCAAAGGGCACAGGGGAGTAAAAGGATTCCATGGTGGTGATCCAATTGACCCTAACTCAATATTGGTTGAAGATTGTGATGTTCTAGTCCCAGCGGCTCTTGGGGGTGTCATCAATAGGGAAAATGCAAATGAAATCAAGGCCAAATTTATTGTGGAAGCAGCTAATCACCCAACTGACCCAGAGGCTGATGAGATTCTGAAGAAGAAAGGGGTTGTTATCCTCCCAGACATATTTGCAAACTCAGGAGGCGTTACAGTTAGCTACTTTGAGTGGGTCCAGAACATCCAAGGTTTCATGTGGGATGAGGAGAAAGTGAACAATGAGCTAAAGACCTACATGACCAAAGGTTTCAAAGATGTGAAGGAAATGTGCAAAACCCATGAATGTGATCCTCGTATGGGAGCCTTCACCCTGGCAGTCAACCGTGTCGCACGTGCCACTGTCCTTAGGGGTTGGGAAGCTTGACATCTATTGCTTCTGCTTTCAATAAATTAAAGTGCTCCACTCTCAGCAACACTTCACAAAGATTTTGTTGCATTCATCTCATGTGTTGGGTGAATTGTATTTTCACCCCAAATTTTCTTTGATTTAATATCTGATTTATCAAAGGGGAAGAATCCATTTACCATTCTTATTTCTTGGATTAATATTCCAATTGCTGTTTTTGCACTAAGTACTAAAAAAAAGTGAGTAGATCTTCGAAATGTCACATAATTCAATTGTACATAATTTATAAACAGTAATTATTAACTATAATCTTGAAATCCAGT

Coding sequences of Glyma19g28770

Limit To All Plant Sequences

>Glyma19g28770.1   sequence type=CDS   gene model=Glyma19g28770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGCACTAGCAGCCACCAACAGGAACTTTAAGTTGGCCTCTAGGCTTCTGGGATTGGATTCAAAGCTTGAGAAAAGTTTGCTGATTCCATTCAGGGAAATCAAGGTTGAATGTACCATACCTAAAGATGATGGCACGTTGCAATCTTATGTTGGGTTCAGGGTTCAACATGATAATGCCAGAGGCCCCATGAAAGGAGGAATCAGATACCATCCTGAGGTTGACCCTGATGAAGTGAATGCTTTAGCACAACTAATGACATGGAAAACAGCTGTAGCAAATATACCATATGGTGGTGCCAAAGGAGGGATAGGGTGTGACCCAGCAGAATTAAGTATATCTGAGTTAGAAAGACTTACTAGAGTTTTTACACAAAAAATTCATGATTTGATTGGAACTCACACAGATGTGCCAGCACCTGATATGGGAACAGGGCCACAGACCATGGCATGGATACTAGATGAGTATTCCAAATTCCACGGTTACTCTCCTGCAGTAGTGACTGGAAAACCTATAGATCTTGGTGGATCTCTAGGTAGAGACGCGGCTACAGGACGGGGAGTCCTCTTTGCAACAGAGGCTTTGCTTAATGAGTATGGGAAGAGTGTATCTGGACAACGGTTTGTCATACAGGGTTTTGGAAATGTAGGGTCATGGGCTGCCCAATTAATTAGTGAGAAAGGTGGAAAAGTTGTAGCTGTGAGTGACATAACTGGAGCCATAAAGAACAGCAATGGTCTTGACATCCCAAACCTTCTTGAGCATTCCAAAGGGCACAGGGGAGTAAAAGGATTCCATGGTGGTGATCCAATTGACCCTAACTCAATATTGGTTGAAGATTGTGATGTTCTAGTCCCAGCGGCTCTTGGGGGTGTCATCAATAGGGAAAATGCAAATGAAATCAAGGCCAAATTTATTGTGGAAGCAGCTAATCACCCAACTGACCCAGAGGCTGATGAGATTCTGAAGAAGAAAGGGGTTGTTATCCTCCCAGACATATTTGCAAACTCAGGAGGCGTTACAGTTAGCTACTTTGAGTGGGTCCAGAACATCCAAGGTTTCATGTGGGATGAGGAGAAAGTGAACAATGAGCTAAAGACCTACATGACCAAAGGTTTCAAAGATGTGAAGGAAATGTGCAAAACCCATGAATGTGATCCTCGTATGGGAGCCTTCACCCTGGCAGTCAACCGTGTCGCACGTGCCACTGTCCTTAGGGGTTGGGAAGCTTGA

>Glyma19g28770.2   sequence type=CDS   gene model=Glyma19g28770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGCACTAGCAGCCACCAACAGGAACTTTAAGTTGGCCTCTAGGCTTCTGGGATTGGATTCAAAGCTTGAGAAAAGTTTGCTGATTCCATTCAGGGAAATCAAGGTTGAATGTACCATACCTAAAGATGATGGCACGTTGCAATCTTATGTTGGGTTCAGGGTTCAACATGATAATGCCAGAGGCCCCATGAAAGGAGGAATCAGATACCATCCTGAGGTTGACCCTGATGAAGTGAATGCTTTAGCACAACTAATGACATGGAAAACAGCTGTAGCAAATATACCATATGGTGGTGCCAAAGGAGGGATAGGGTGTGACCCAGCAGAATTAAGTATATCTGAGTTAGAAAGACTTACTAGAGTTTTTACACAAAAAATTCATGATTTGATTGGAACTCACACAGATGTGCCAGCACCTGATATGGGAACAGGGCCACAGACCATGGCATGGATACTAGATGAGTATTCCAAATTCCACGGTTACTCTCCTGCAGTAGTGACTGGAAAACCTATAGATCTTGGTGGATCTCTAGGTAGAGACGCGGCTACAGGACGGGGAGTCCTCTTTGCAACAGAGGCTTTGCTTAATGAGTATGGGAAGAGTGTATCTGGACAACGGTTTGTCATACAGGGTTTTGGAAATGTAGGGTCATGGGCTGCCCAATTAATTAGTGAGAAAGGTGGAAAAGTTGTAGCTGTGAGTGACATAACTGGAGCCATAAAGAACAGCAATGGTCTTGACATCCCAAACCTTCTTGAGCATTCCAAAGGGCACAGGGGAGTAAAAGGATTCCATGGTGGTGATCCAATTGACCCTAACTCAATATTGGTTGAAGATTGTGATGTTCTAGTCCCAGCGGCTCTTGGGGGTGTCATCAATAGGGAAAATGCAAATGAAATCAAGGCCAAATTTATTGTGGAAGCAGCTAATCACCCAACTGACCCAGAGGCTGATGAGATTCTGAAGAAGAAAGGGGTTGTTATCCTCCCAGACATATTTGCAAACTCAGGAGGCGTTACAGTTAGCTACTTTGAGTGGGTCCAGAACATCCAAGGTTTCATGTGGGATGAGGAGAAAGTGAACAATGAGCTAAAGACCTACATGACCAAAGGTTTCAAAGATGTGAAGGAAATGTGCAAAACCCATGAATGTGATCCTCGTATGGGAGCCTTCACCCTGGCAGTCAACCGTGTCGCACGTGCCACTGTCCTTAGGGGTTGGGAAGCTTGA

Predicted protein sequences of Glyma19g28770

Limit To All Plant Sequences

>Glyma19g28770.1   sequence type=predicted peptide   gene model=Glyma19g28770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNALAATNRNFKLASRLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLQSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCDPAELSISELERLTRVFTQKIHDLIGTHTDVPAPDMGTGPQTMAWILDEYSKFHGYSPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEYGKSVSGQRFVIQGFGNVGSWAAQLISEKGGKVVAVSDITGAIKNSNGLDIPNLLEHSKGHRGVKGFHGGDPIDPNSILVEDCDVLVPAALGGVINRENANEIKAKFIVEAANHPTDPEADEILKKKGVVILPDIFANSGGVTVSYFEWVQNIQGFMWDEEKVNNELKTYMTKGFKDVKEMCKTHECDPRMGAFTLAVNRVARATVLRGWEA*

>Glyma19g28770.2   sequence type=predicted peptide   gene model=Glyma19g28770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNALAATNRNFKLASRLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLQSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCDPAELSISELERLTRVFTQKIHDLIGTHTDVPAPDMGTGPQTMAWILDEYSKFHGYSPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEYGKSVSGQRFVIQGFGNVGSWAAQLISEKGGKVVAVSDITGAIKNSNGLDIPNLLEHSKGHRGVKGFHGGDPIDPNSILVEDCDVLVPAALGGVINRENANEIKAKFIVEAANHPTDPEADEILKKKGVVILPDIFANSGGVTVSYFEWVQNIQGFMWDEEKVNNELKTYMTKGFKDVKEMCKTHECDPRMGAFTLAVNRVARATVLRGWEA*

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