SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G64770 | AT | Annotation by Michelle Graham. TAIR10: NDH-dependent cyclic electron flow 1 | chr1:24057549-24059415 FORWARD LENGTH=348 | SoyBase | E_val: 4.00E-142 | ISS |
| GO:0005975 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process | SoyBase | N/A | ISS |
| GO:0006098 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt | SoyBase | N/A | ISS |
| GO:0009773 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosynthetic electron transport in photosystem I | SoyBase | N/A | ISS |
| GO:0010264 | GO-bp | Annotation by Michelle Graham. GO Biological Process: myo-inositol hexakisphosphate biosynthetic process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009534 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid | SoyBase | N/A | ISS |
| GO:0009535 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane | SoyBase | N/A | ISS |
| GO:0010598 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: NAD(P)H dehydrogenase complex (plastoquinone) | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0030246 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding | SoyBase | N/A | ISS |
| KOG1594 | KOG | Uncharacterized enzymes related to aldose 1-epimerase | JGI | ISS | |
| PTHR11122 | Panther | APOSPORY-ASSOCIATED PROTEIN C-RELATED | JGI | ISS | |
| PTHR11122:SF5 | Panther | APOSPORY-ASSOCIATED PROTEIN C-RELATED | JGI | ISS | |
| UniRef100_A2Q5N9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Galactose mutarotase-like n=1 Tax=Medicago truncatula RepID=A2Q5N9_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1N873 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N873_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma19g28700 not represented in the dataset |
Glyma19g28700 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g04600 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g110700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g28700.1 sequence type=CDS gene model=Glyma19g28700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCTTTTCTTTCCTTATCTCTTCCCAAATTAAACTTAATAAAGGCCTCTTCAGCAGCTAACACCAATACAACAACCACTCTTCCCACAGCTGAGACACTCAATGAGAAATTTGGCAGGAAAGGCATCAAGTTCTTGGAGTCTGATAACATTCCCATAGTTGAGCTAACAGTGAGAAATGGCAGCTCCTTGAGGCTGAGGATACCTGATGCTCATGTGACATCATACAAACCAAAAGTTAATTGGAAAGATGATGGCTTCCAGGAGGTTCTTTACACAATTCCTGCAACTGAAACTGGCCCTTACAAGGCCAAAGGTGGGGTTGGTTTGGTCATGAATGAATTGCTGCAACCTGGAGCCAAAGGGTTGCTCCCTTCCACTTTGGAGTGGACTGTAAATGATGTTGATTCTGATTCCATTGATGCTCTCCAGCTTGAATTAAGCTGCACTAGTAGATTCTTTGACATCACATACATTGTGACCCTCTATCCTGTGAGCATGGCCACAGCAGTTGTAGCTAAGAACATAGGCCCCAAGCCTGCCACTCTAACCAATGCTATTCTAAGCCATTTTAGATTCAAGAAAAGAGGTGAAACAGCAATTCAAGGCCTCAGAAGCTGCTCATATATTCCACACGCTCCTCCATCTTCTCCCTTTCAAATCTTGACCCCATCAGAAGCTACCATATCTGAGCCTCCTAGATGGTTGTCCTTTGGTAATGAGCCTGAAGCCAAGCCCGGCACGTGGGGTCAGCAAGCTTTGTCTATTACCCTCCTTGAGAATAAGATGAGTAGAGTTTATGCTGCGCCTCCAAAGGAAAGATTAAAGGCATTCTATAACACCCCTCCCTCCAAGTATGAAACCATTGATCAGGGACGTGGGCTTTGCTTCAGGGTGATAAGAATGGGTTTTGAGGATATTTATTTATCAAGCCCTGGTTCCTTGTCAGAGAAATATGGAAAGGACTACTTCATCTGCACTGGCCCTGCTTCAATACTGGTGCCTGTGACTGTAAATCCTGGTGAAGAATGGAGAGGGGCACAAGTTATTGAGCATGATAATTTAACATGA
>Glyma19g28700.1 sequence type=predicted peptide gene model=Glyma19g28700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASFLSLSLPKLNLIKASSAANTNTTTTLPTAETLNEKFGRKGIKFLESDNIPIVELTVRNGSSLRLRIPDAHVTSYKPKVNWKDDGFQEVLYTIPATETGPYKAKGGVGLVMNELLQPGAKGLLPSTLEWTVNDVDSDSIDALQLELSCTSRFFDITYIVTLYPVSMATAVVAKNIGPKPATLTNAILSHFRFKKRGETAIQGLRSCSYIPHAPPSSPFQILTPSEATISEPPRWLSFGNEPEAKPGTWGQQALSITLLENKMSRVYAAPPKERLKAFYNTPPSKYETIDQGRGLCFRVIRMGFEDIYLSSPGSLSEKYGKDYFICTGPASILVPVTVNPGEEWRGAQVIEHDNLT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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