Glyma19g28690 - SoyBase

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Report for Sequence Feature Glyma19g28690

Feature Type:	gene_model
Chromosome:	Gm19
Start:	36268242
stop:	36271521
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g28690

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G54385	AT	Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein \| chr1:20301289-20303048 REVERSE LENGTH=560	SoyBase	E_val: 0	ISS
GO:0000245	GO-bp	Annotation by Michelle Graham. GO Biological Process: spliceosomal complex assembly	SoyBase	N/A	ISS
GO:0000398	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
PTHR12794	Panther	GEMIN2	JGI		ISS
UniRef100_I1N872	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N872_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q5XVI1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ARM repeat-containing protein n=1 Tax=Arabidopsis thaliana RepID=Q5XVI1_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g28690

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g28690

Paralog	Evidence	Comments
Glyma16g04610	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g28690 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g110600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g28690

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g28690

Limit To All Plant Sequences

>Glyma19g28690.1   sequence type=CDS   gene model=Glyma19g28690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTAGGAGTCTCAGCCCTTTGGTGAGGCAAGAGCTGGCAAATCTTGAGAAAGATGAAGATAGCCGCAAATCCGCCATGAAGGCGTTGAAATCCTATGTGAAAGATTTGGATTATAAGGCCATTCCTTTCTTTCTTGCAAAGGTTTCTGAGAGCAAGGAAAATTGTTCAGGGGAGTTCACAATTTCAATCTATGAAGTTCTTGCACGGGTTCACGGTGTCAAAATTGTTCCCTTGATAGACAGCATCATGAGAACTATAGTCAAGACTTTGGCTTCAAGTGCAGGGTCCTTCCCTCTCCAACAGGCTTGCTCAAAGGTGGTTCCTGCAATTGCAAGATATGGAATTGACCCCTCAACCCCAGAAGATAAAAAGAGGCACATTATTCAGTCCCTTTGCACGCCTCTTTCTGATTCCCTTTCGAGTTCTCAGGAGAGTCTTACTTCGGGTGCTGCTCTTTGCTTGAAGGCTCTGGTGGATTCTGAAAATTGGAGGTTTGCTTCAGATGAGTTGGTCAATAGGGTTTGCCAGAATGTTGCTGTGGCATTAGATGGAAAGTCTGGTCAAACCAACTCACACATGGGCCTAGTTATGTCGTTGGCCAAGCGCAATGCTTTGATCATTGAAGCGTATGCAAGGTTGCTAGTACAATCTGGAATAAGAATACTGAATGCTGGCCTTGTGGAGGGGAATTCTCAGAAAAGGCTTTCATCCATTCAGATGATCAACTACTTGATGAGAAGTTTGGACTCTAGAAGCATATTCTCAGAGATTGAATTGATAATTGAGGAGATGGACAAGTGCCAATCTGATAAAATGGCATTTGTGCAAGGTGCGGCACTTGAGGCTTTGCAAACTGCCAAGAGAATTGCAAGTGATAAAAAACCAAGATATGCTAAAAGTCCTGCTTCAGTGACAGGATCAAACTTTAGTAGGAGAGAAGAAGACTATATGGAGGGAGAGAATACTTCTTCTGGTGAAGGAGAACATACTCCTTCCTCTCTTACACCAGAATCGAGTACATTCGACTTTTTCTCTGGATATGAATCTGTTGGGTCTCCTATTTCAAGCAACTTAGACTATGGACAAAGAAGCGTGACTAGGAAGCTTTGGAGTAATGAAAACGGAGGGGTTGATGTTTCTCTGAAGGATGGCTTGTTTTCACAAGTAGGAAAAGAAGGTGCTTTGTTAGAGCATTCATTGATTCACGAGTTTTCTAATGGAGAGGGAGACTATACAGAGGAGTTTGCTGGTTTCATGGGCAGAAATACCAGGCATGGAGTATCCAAAAGTACCACCACAAGTCCACTAAGGTCACACACTCAGGCAACTGTTGACAGCATAAAAATCTTTGAGACCCCTAGGAAGCTCATCCACTCTCTTCAAGATTCAAGTGATGTGTCTTTGGGTTGCTCTAGGAAGCAGAATAGAAGGTATAGAAGTCTATCCTCAGACAACATTGAGTGGAGTCCAGCTTCTAAATACGACCAAAACGGTTTTGCAGATGACACGAACAAGTGTGACAGTGAAGTAATTGAAGGTTGTGCTGAGGTTGAGTTCCAAGGTAGCTCAGAGTCAGTCTCATCAACAGATGACATTCCTGCAGATGCCGATAAGCAGATGCATACCGAAGTGGTTCCTGTAAACAGAAATGCTAAGACTACATATAAATTGGTTTGTGGTCTTTCATGTGTTCTACTTGCAGTGGCCACTCCATTGCTTTGGATCAATAGTCAGGATGAAGGTCATTATCTTGTGCCAACATAA

Predicted protein sequences of Glyma19g28690

Limit To All Plant Sequences

>Glyma19g28690.1   sequence type=predicted peptide   gene model=Glyma19g28690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRSLSPLVRQELANLEKDEDSRKSAMKALKSYVKDLDYKAIPFFLAKVSESKENCSGEFTISIYEVLARVHGVKIVPLIDSIMRTIVKTLASSAGSFPLQQACSKVVPAIARYGIDPSTPEDKKRHIIQSLCTPLSDSLSSSQESLTSGAALCLKALVDSENWRFASDELVNRVCQNVAVALDGKSGQTNSHMGLVMSLAKRNALIIEAYARLLVQSGIRILNAGLVEGNSQKRLSSIQMINYLMRSLDSRSIFSEIELIIEEMDKCQSDKMAFVQGAALEALQTAKRIASDKKPRYAKSPASVTGSNFSRREEDYMEGENTSSGEGEHTPSSLTPESSTFDFFSGYESVGSPISSNLDYGQRSVTRKLWSNENGGVDVSLKDGLFSQVGKEGALLEHSLIHEFSNGEGDYTEEFAGFMGRNTRHGVSKSTTTSPLRSHTQATVDSIKIFETPRKLIHSLQDSSDVSLGCSRKQNRRYRSLSSDNIEWSPASKYDQNGFADDTNKCDSEVIEGCAEVEFQGSSESVSSTDDIPADADKQMHTEVVPVNRNAKTTYKLVCGLSCVLLAVATPLLWINSQDEGHYLVPT*

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