Glyma19g28660 - SoyBase

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Report for Sequence Feature Glyma19g28660

Feature Type:	gene_model
Chromosome:	Gm19
Start:	36231801
stop:	36238922
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g28660

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G23840	AT	Annotation by Michelle Graham. TAIR10: HNH endonuclease \| chr2:10153982-10155600 REVERSE LENGTH=284	SoyBase	E_val: 5.00E-106	ISS
GO:0009269	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to desiccation	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0004519	GO-mf	Annotation by Michelle Graham. GO Molecular Function: endonuclease activity	SoyBase	N/A	ISS
PF01844	PFAM	HNH endonuclease	JGI		ISS
UniRef100_A2Q5Q1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: HNH nuclease n=1 Tax=Medicago truncatula RepID=A2Q5Q1_MEDTR	SoyBase	E_val: 9.00E-138	ISS
UniRef100_I1N870	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N870_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g28660

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g28660

Paralog	Evidence	Comments
Glyma16g04656	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g28660 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g110300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g28660

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g28660

Limit To All Plant Sequences

>Glyma19g28660.1   sequence type=CDS   gene model=Glyma19g28660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACAGTTCACCACGCAGGGTCGCCTGAAGCTGCTCTTGAATGGGGAGGGTGTGTCTTCTGTTTTGGAGCACAAGGACCCTTTTCTCTACAAGTGCAGATCAGTTCAGACCCACAAGAGAAGAACAAGGTACGCAGGTTCTTCTGCCAGAATTTACTATGCATCAACATCATCTCTGAGTAGCAAAAGCCACCGTTGTAATGCGGAGGCACGTCACACTTCTGGCAATGGGAGTGTTCATGATGAATATGATGACATTGATGATGATGAGGATGAGGATGATGAGGAGGAGGAGGAGGAGGATGTGTTTGACCGAGATGGCTTGTCTTGTTTCCGGGGTTTGGTGTTGGACATAGCTTACAGGCCAGTAAATGTCGTAGGCTGGAAACGTGCTATATGTTTGGAGTTTATGGAGAAGGCAGATGTACTGGAGTATTATGCTAAGACAGTGAATTCCCCCAGTGGATCTTTCTATATACCAGCTGTCTTAAGGGTTCCTCATTTACTTCAGGTTGTTAAAAGAAGAATAATCAAGAACAATCTTAGTCGGAAAAATATACTATTTCGGGACAATTACACCTGTCAGTATTGCTCTTCGCACGAGAATTTGACCATTGATCATGTTGTGCCTGCTGCACTAGGTGGAGAATGGACATGGGAAAATCTAGTGACTGCTTGTGCCAAATGCAACTGCAAAAAGGGTAGAAAAACTTTAGAGGAAGCAAAAATGAAGTTGATTAAGCCCCCAAAGGTTCCAAAGGACTATGACATTCTTGCCATACCTCTAACTGCTGCAGCTCTAAGGATGCTGACAATAAGAAAGGGAACACCTGAAGAATGGCGTCAGTATCTAAGGTCTCCTTGA

Predicted protein sequences of Glyma19g28660

Limit To All Plant Sequences

>Glyma19g28660.1   sequence type=predicted peptide   gene model=Glyma19g28660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQFTTQGRLKLLLNGEGVSSVLEHKDPFLYKCRSVQTHKRRTRYAGSSARIYYASTSSLSSKSHRCNAEARHTSGNGSVHDEYDDIDDDEDEDDEEEEEEDVFDRDGLSCFRGLVLDIAYRPVNVVGWKRAICLEFMEKADVLEYYAKTVNSPSGSFYIPAVLRVPHLLQVVKRRIIKNNLSRKNILFRDNYTCQYCSSHENLTIDHVVPAALGGEWTWENLVTACAKCNCKKGRKTLEEAKMKLIKPPKVPKDYDILAIPLTAAALRMLTIRKGTPEEWRQYLRSP*

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