SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G23840 | AT | Annotation by Michelle Graham. TAIR10: HNH endonuclease | chr2:10153982-10155600 REVERSE LENGTH=284 | SoyBase | E_val: 5.00E-106 | ISS |
| GO:0009269 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to desiccation | SoyBase | N/A | ISS |
| GO:0009409 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cold | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0004519 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: endonuclease activity | SoyBase | N/A | ISS |
| PF01844 | PFAM | HNH endonuclease | JGI | ISS | |
| UniRef100_A2Q5Q1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: HNH nuclease n=1 Tax=Medicago truncatula RepID=A2Q5Q1_MEDTR | SoyBase | E_val: 9.00E-138 | ISS |
| UniRef100_I1N870 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N870_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma19g28660 not represented in the dataset |
Glyma19g28660 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g04656 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g110300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g28660.1 sequence type=CDS gene model=Glyma19g28660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCACAGTTCACCACGCAGGGTCGCCTGAAGCTGCTCTTGAATGGGGAGGGTGTGTCTTCTGTTTTGGAGCACAAGGACCCTTTTCTCTACAAGTGCAGATCAGTTCAGACCCACAAGAGAAGAACAAGGTACGCAGGTTCTTCTGCCAGAATTTACTATGCATCAACATCATCTCTGAGTAGCAAAAGCCACCGTTGTAATGCGGAGGCACGTCACACTTCTGGCAATGGGAGTGTTCATGATGAATATGATGACATTGATGATGATGAGGATGAGGATGATGAGGAGGAGGAGGAGGAGGATGTGTTTGACCGAGATGGCTTGTCTTGTTTCCGGGGTTTGGTGTTGGACATAGCTTACAGGCCAGTAAATGTCGTAGGCTGGAAACGTGCTATATGTTTGGAGTTTATGGAGAAGGCAGATGTACTGGAGTATTATGCTAAGACAGTGAATTCCCCCAGTGGATCTTTCTATATACCAGCTGTCTTAAGGGTTCCTCATTTACTTCAGGTTGTTAAAAGAAGAATAATCAAGAACAATCTTAGTCGGAAAAATATACTATTTCGGGACAATTACACCTGTCAGTATTGCTCTTCGCACGAGAATTTGACCATTGATCATGTTGTGCCTGCTGCACTAGGTGGAGAATGGACATGGGAAAATCTAGTGACTGCTTGTGCCAAATGCAACTGCAAAAAGGGTAGAAAAACTTTAGAGGAAGCAAAAATGAAGTTGATTAAGCCCCCAAAGGTTCCAAAGGACTATGACATTCTTGCCATACCTCTAACTGCTGCAGCTCTAAGGATGCTGACAATAAGAAAGGGAACACCTGAAGAATGGCGTCAGTATCTAAGGTCTCCTTGA
>Glyma19g28660.1 sequence type=predicted peptide gene model=Glyma19g28660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAQFTTQGRLKLLLNGEGVSSVLEHKDPFLYKCRSVQTHKRRTRYAGSSARIYYASTSSLSSKSHRCNAEARHTSGNGSVHDEYDDIDDDEDEDDEEEEEEDVFDRDGLSCFRGLVLDIAYRPVNVVGWKRAICLEFMEKADVLEYYAKTVNSPSGSFYIPAVLRVPHLLQVVKRRIIKNNLSRKNILFRDNYTCQYCSSHENLTIDHVVPAALGGEWTWENLVTACAKCNCKKGRKTLEEAKMKLIKPPKVPKDYDILAIPLTAAALRMLTIRKGTPEEWRQYLRSP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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