Glyma19g28600 - SoyBase

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Report for Sequence Feature Glyma19g28600

Feature Type:	gene_model
Chromosome:	Gm19
Start:	36187569
stop:	36189044
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g28600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G19440	AT	Annotation by Michelle Graham. TAIR10: O-Glycosyl hydrolases family 17 protein \| chr2:8418164-8419806 REVERSE LENGTH=478	SoyBase	E_val: 3.00E-133	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0031225	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004553	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds	SoyBase	N/A	ISS
GO:0043169	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cation binding	SoyBase	N/A	ISS
PTHR16631	Panther	GLUCAN 1,3-BETA-GLUCOSIDASE-RELATED	JGI		ISS
PTHR16631:SF1	Panther	GLUCAN 1,3-BETA-GLUCOSIDASE	JGI		ISS
PF00332	PFAM	Glycosyl hydrolases family 17	JGI		ISS
PF07983	PFAM	X8 domain	JGI		ISS
UniRef100_A2Q5Q4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glucan endo-1,3-beta-glucosidase n=1 Tax=Medicago truncatula RepID=A2Q5Q4_MEDTR	SoyBase	E_val: 4.00E-159	ISS
UniRef100_UPI000233E89B	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E89B related cluster n=1 Tax=unknown RepID=UPI000233E89B	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g28600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g28600

Paralog	Evidence	Comments
Glyma16g04680	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g28600 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g109900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g28600

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g28600

Limit To All Plant Sequences

>Glyma19g28600.2   sequence type=CDS   gene model=Glyma19g28600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTCTGACGCTTAAGGAAGTACTACACTATATATTCTTTTGTAGGTATGTAGCAGTTGGGAACAAGCCATTTTTGAAATCCTACAACAATTCATTCTTGAATATCACCTTCCCTCCACTGCATAAAATTCAAAATGCCCTTAATGAAGCAGGTCTTGGAGACAAAATAAAGGTCATAGTGTCCTTGAATGCAGATGTTAACCAGTCTCCAGAGAATAATCATGTTCCATCTGCAGGAATATTTAGGCCCTATATATCAGTGAATGGCGTGCCATTTACCATGAACATTTACCCCTTCTTAAGTCTTTATGGTAACGATGATTTTCCTTTCAACTACGCCTTCTTCGATGGTGTAGACAATCCGGAAAACGATAACGTTGGGTTTGGGGACCTGCCTATTTTGGTGGGAGAAGTAGGATGGCCTACTGAAGGGGACAAGAATGCCAACACAGGCAATGCTTTGAGATTCTATAATGGTCTTCTGCCGAGGCTTGCAGCAAATCGAGGCACCCCGCGCCGCCCTGGATACATTGAAGTTTATCTATTCGGATTCATCGATGAGGATGCCAAGAGCATTGCTCCGGGAAACTTAGAACGCCATTGGGGGACATTCAGATACGATGGACAACCTAAGTTTCCAATGGACCTTTCTGGTCAGAACCAAAACAAATTTCTCGTAGGTACACAGAATATAACACTAACTATGCTTGCACCTTTGGATTGCACGGCGCTTGGATACGGTTGTTCTTGCAACAATTTGGATTTGAATGGGAACGCCTCTTATGCGTTTAATATGTACTTCCAGGTGCAAAATCAGAACCCCATGGGGTGCGATTTTCAAGGTTTGTCCAAGCTTACTACGGACAATATCTCAACACCCACTGGCAATTTTATCGTTCAGATAGTTAGTTCTTCAGGCTCTTCTCTGATGCCCTCGCTTGCTGCTACCTTGTTTGTTAGTTTATTCATGATTCTGTTTTCTTAG

Predicted protein sequences of Glyma19g28600

Limit To All Plant Sequences

>Glyma19g28600.2   sequence type=predicted peptide   gene model=Glyma19g28600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTLTLKEVLHYIFFCRYVAVGNKPFLKSYNNSFLNITFPPLHKIQNALNEAGLGDKIKVIVSLNADVNQSPENNHVPSAGIFRPYISVNGVPFTMNIYPFLSLYGNDDFPFNYAFFDGVDNPENDNVGFGDLPILVGEVGWPTEGDKNANTGNALRFYNGLLPRLAANRGTPRRPGYIEVYLFGFIDEDAKSIAPGNLERHWGTFRYDGQPKFPMDLSGQNQNKFLVGTQNITLTMLAPLDCTALGYGCSCNNLDLNGNASYAFNMYFQVQNQNPMGCDFQGLSKLTTDNISTPTGNFIVQIVSSSGSSLMPSLAATLFVSLFMILFS*

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