Glyma19g28587 - SoyBase

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Report for Sequence Feature Glyma19g28587

Feature Type:	gene_model
Chromosome:	Gm19
Start:	36183648
stop:	36184127
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g28587

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G56040	AT	Annotation by Michelle Graham. TAIR10: Leucine-rich receptor-like protein kinase family protein \| chr5:22695050-22698410 FORWARD LENGTH=1090	SoyBase	E_val: 3.00E-14	ISS
GO:0002237	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to molecule of bacterial origin	SoyBase	N/A	ISS
GO:0006084	GO-bp	Annotation by Michelle Graham. GO Biological Process: acetyl-CoA metabolic process	SoyBase	N/A	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0007169	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane receptor protein tyrosine kinase signaling pathway	SoyBase	N/A	ISS
GO:0010075	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth	SoyBase	N/A	ISS
GO:0010103	GO-bp	Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis	SoyBase	N/A	ISS
GO:0016126	GO-bp	Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process	SoyBase	N/A	ISS
GO:0016132	GO-bp	Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process	SoyBase	N/A	ISS
GO:0048443	GO-bp	Annotation by Michelle Graham. GO Biological Process: stamen development	SoyBase	N/A	ISS
GO:0048653	GO-bp	Annotation by Michelle Graham. GO Biological Process: anther development	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF819	Panther		JGI		ISS
UniRef100_C6ZRZ1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Receptor-like protein kinase n=1 Tax=Glycine max RepID=C6ZRZ1_SOYBN	SoyBase	E_val: 8.00E-49	ISS
UniRef100_C6ZRZ1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Receptor-like protein kinase n=1 Tax=Glycine max RepID=C6ZRZ1_SOYBN	SoyBase	E_val: 8.00E-49	ISS

Expression Patterns of Glyma19g28587

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g28587 not represented in the dataset	Glyma19g28587 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g28587 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g109800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g28587

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g28587

Limit To All Plant Sequences

>Glyma19g28587.1   sequence type=CDS   gene model=Glyma19g28587   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAAAAACAAATAAACATGATCGCAGGGACATATCTCACAACGTTCTCAGCGGAAACCTCCAATATCTCGCGGGCCTGCAAAATCTCGTGGTGCTGAACATCTCGTACAACAAATTCACGGGACGCGTTCCGGACATGCCGTTCTTCGTGAAGCTACCGCTGAGCGTGCTGGCGGGGAACCCGGAGCTGTGCTTCTTCGGCAACAATGCGGCGGCAGAGGGAAGTCGGAGCGTGTTCATGCTGCTAATGGCGACGCTGTATATGGTGGTGGCAACAAAACTACGAGGGGACCGCCAAAACGACGTGGAGGTGGATGGAAAGGACAACAACGCGGACATGGCTCCACCTTGGGAAAAAATCCTCCCGAAGCTAGGGTTACATATAGAGGGGAATGCAGTTCAGAGAGAAAACGGAAGACGAAGAATGTGA

Predicted protein sequences of Glyma19g28587

Limit To All Plant Sequences

>Glyma19g28587.1   sequence type=predicted peptide   gene model=Glyma19g28587   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPKTNKHDRRDISHNVLSGNLQYLAGLQNLVVLNISYNKFTGRVPDMPFFVKLPLSVLAGNPELCFFGNNAAAEGSRSVFMLLMATLYMVVATKLRGDRQNDVEVDGKDNNADMAPPWEKILPKLGLHIEGNAVQRENGRRRM*

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