Glyma19g28476 - SoyBase

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Report for Sequence Feature Glyma19g28476

Feature Type:	gene_model
Chromosome:	Gm19
Start:	35972068
stop:	35973871
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g28476

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G04070	AT	Annotation by Michelle Graham. TAIR10: NAC domain containing protein 47 \| chr3:1061573-1062976 REVERSE LENGTH=343	SoyBase	E_val: 1.00E-103	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006865	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid transport	SoyBase	N/A	ISS
GO:0007275	GO-bp	Annotation by Michelle Graham. GO Biological Process: multicellular organismal development	SoyBase	N/A	ISS
GO:0010260	GO-bp	Annotation by Michelle Graham. GO Biological Process: organ senescence	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF02365	PFAM	No apical meristem (NAM) protein	JGI		ISS
UniRef100_B9U5I1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Transcriptional factor NAC11 n=2 Tax=Glycine max RepID=B9U5I1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_B9U5I1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcriptional factor NAC11 n=2 Tax=Glycine max RepID=B9U5I1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g28476

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g28476 not represented in the dataset	Glyma19g28476 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g28476

Paralog	Evidence	Comments
Glyma16g04740	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g28476 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g108800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g28476

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g28476

Limit To All Plant Sequences

>Glyma19g28476.1   sequence type=CDS   gene model=Glyma19g28476   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAACCCAGAATCCAATTTGCCACCCGGTTTTAGGTTCCACCCAACCGATGAGGAGCTCATTCTTCACTACCTTAGTAAAAAGGTAGCATCCATACCCTTGCCCGTTTCCATCATTGCAGAGGTTGATATCTACAAGTTAGATCCATGGGACTTACCAGCTAAGGCAACCTTTGGGGAGAAAGAATGGTATTTTTTTAGTCCTAGAGACCGAAAGTACCCTAATGGTGCAAGGCCAAACAGGGCAGCTGCTTCAGGTTATTGGAAGGCCACTGGCACTGATAAGACCATAGTGACATCATTGCAAGGAGGAGCACAAGAGAGCGTTGGTGTGAAGAAGGCTTTGGTGTTCTACAAAGGAAGACCCTCAAAGGGTGTGAAGACCAATTGGATCATGCATGAATATCGCCTTTTGGATGACTGGGTTCTGTGCCGGATTTACAAGAAATCCAAACATCCTCTAACTTCAACAGAGGCATCAATAGGGGTAGGTGATGTAGATCAAGCAGAGGAGCACGTATTCAAAGAGACCCTTTTGCCAATCTCAAAATCTCCAACACCTCCACCTCAAAACACATTGATATCTCAGAAATCTGTGTCCTTCTCCAACTTGTTGGATGCCATGGACTACTCTATCCTAAGCAGTTTCTTATCTGAAAATCATACCACCCACCCACCAGGGGTTGGATCAAGTACAGGCTTCAACACTGGGAATTTGGATCAGCAACCATCTCCAATCGACAACAGCAATGGTTACATGTTTCAGAAGAACAACCCCCAATTGAACCCTTCAGTCTCCAACATGGAAAACATGATGAGGCCAAAGCGCCAAGTTTCAAACATGGATGAGGAAACCTTGTACCCATCAAAGAAATACCTTAGTTCCTCTTGCAACTTCCCTACTAACATCAACAACCAATACGAGAACCCACAATGGAACTACCTCATGAAGCAGTCTTTGCTGAATCAACGGTTAATGCTTGGTCCTCATCTTCAATTTCAAGGATAA

Predicted protein sequences of Glyma19g28476

Limit To All Plant Sequences

>Glyma19g28476.1   sequence type=predicted peptide   gene model=Glyma19g28476   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGNPESNLPPGFRFHPTDEELILHYLSKKVASIPLPVSIIAEVDIYKLDPWDLPAKATFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIVTSLQGGAQESVGVKKALVFYKGRPSKGVKTNWIMHEYRLLDDWVLCRIYKKSKHPLTSTEASIGVGDVDQAEEHVFKETLLPISKSPTPPPQNTLISQKSVSFSNLLDAMDYSILSSFLSENHTTHPPGVGSSTGFNTGNLDQQPSPIDNSNGYMFQKNNPQLNPSVSNMENMMRPKRQVSNMDEETLYPSKKYLSSSCNFPTNINNQYENPQWNYLMKQSLLNQRLMLGPHLQFQG*

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