Glyma19g28452 - SoyBase

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Report for Sequence Feature Glyma19g28452

Feature Type:	gene_model
Chromosome:	Gm19
Start:	35944034
stop:	35946633
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g28452

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G15010	AT	Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein \| chr5:4857241-4858959 FORWARD LENGTH=572	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_G7KYE7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7KYE7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1ML50	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1ML50_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g28452

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g28452 not represented in the dataset	Glyma19g28452 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g28452

Paralog	Evidence	Comments
Glyma16g04781	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g28452 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g108600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g28452

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g28452

Limit To All Plant Sequences

>Glyma19g28452.1   sequence type=CDS   gene model=Glyma19g28452   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCAGAATCAGATTTAACTTAACTCTTTTCTCTGTTGAGCTATCACGCATCAGCCATAGCTCACTCACTGTTACTCATAGTCATAAAGTTGAGCACCCCCTTATGAGTGCTACTTTCAATTTCTTTAAGCCTTTTAGCTCTGAAACTTTTTTAGCACCACCAAAATTTGGTTTCTCAGTCAAGCATTTTTCTACTTCTTCAACCAGAAACCTTGGGGCTTCAACTGATGCCCCTGCACATGAGGCCTTGAGTCATGATGATGATGATGATAATGATGATGGGGATGATGATGATCATGACAAGAACAAAGATACCCATTGTAGTCAGTTACGTTTTAGGGATGATAGACTTTCCCAAGATGTTAAAACCATTTTGGATATAATGCATGAAATGGGTTCTGGACCATCTCAAACTAAGCAGAAGCTTGAGCATTGCAGTGTTGACCTATCAGCAAAGCTGGTTGTGGAGGTCCTTTTGAGAACTCGCAATGATTGGGAGGCGGCTTTCACTTTTTTCTTGTGGGCTGGCAAGCAACCGGGGTATGCTCATTCGATTCGCGAGTACCATTCTATGATCTCCATCCTTGGCAAAATGAGGAAGTTTGATACTGCTTGGAACTTAATTGAGGAAATGAGAAGAGGTAGAACTGGTCCATCTCTTGTCACTCCCCAAACACTGTTGATTATGATCAGGAAATACTGTGCTGTACATGATGTTGCAAGGGCTATCAATACTTTCTATGCTTATAAACAGTTTAACTTTCAAGTTGGGCTAGAGGAATTTCATAGCCTTCTTTCTGCCCTTTGTCGGTATAAGAATGTGCAAGATGCTGAGCACTTACTGTTCTGCAACAAAAATTTATTCCCATTAGATACCAAAAGCTTTAACATCATTCTGAATGGATGGTGTAATTTGATTGTAAGCACTAGTCATGCAGAAAGAATATGGCATGAGATGAGCAAGCGAAGAATCCAACACGATGTTGTCTCCTATGGAAGTATCATATCTTGCTATTCAAAATCTTCTAAACTTTACAAGGTGCTCAGGATGTTTGATGAAATGAAGAAAAGGAAGATCACTCCAGATAGGAAGGTTTATAATGCAGTCATTTATGCCCTAGCAAAGGGCAGGCTTGTGAAAGAAGCTGTCAATCTCATTGGAACATTGGAAGACAATGATGTTACTCCAAATGTTGTAACTTACAACTCCCTGATCAAACCTCTCTGCAAAGCCGGCAAAGTTGATGAAGCTAAACAACTTTTTTATGAGATTTTGAAACGGCATCTGTCCCCAACAATTCAAACTTTTCATGCTTTCTTCCGTATATTACGGACCAAGGAAGAAGTATTTGAGCTCTTGGACAAAATGAAAGAGCTGGGATGCTACCCAACCATTGAGACTTATATAATGTTGATGAGAAAGTTTTGCCGCTGGCGCCAGCTTGATGATGTATTTAAGATGTGGGATGCAATGAGGGAAGATGGGATAGGCCATGATCGTAGTTCATATATAGTGCTGATTCATGGGCTGTTTCTAAATGGAAAGCTGGAGGAAGCGCACACATATTATGCAGAGATGCAAGAGAAAGGCTTCCTACCTGAACCGAAGACAGAAGAAATGCTTCAAGCATGGGTTTCCGGGAAACAGGCAACAGAGGGTCAGGAGACAAATTTAGAACCTAATCAACTGGAAAATGATACTCTTAAAAAGAAAGTAAAGGCCATACCGAGTAAATTTGACAGGGAAAAAGCCTTTCTTCGTGAACCTGAGACCAGAAGAGTAACAAGAGAACGGGGTTTTTCTTTCTGGGAGCAGTAA

Predicted protein sequences of Glyma19g28452

Limit To All Plant Sequences

>Glyma19g28452.1   sequence type=predicted peptide   gene model=Glyma19g28452   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIRIRFNLTLFSVELSRISHSSLTVTHSHKVEHPLMSATFNFFKPFSSETFLAPPKFGFSVKHFSTSSTRNLGASTDAPAHEALSHDDDDDNDDGDDDDHDKNKDTHCSQLRFRDDRLSQDVKTILDIMHEMGSGPSQTKQKLEHCSVDLSAKLVVEVLLRTRNDWEAAFTFFLWAGKQPGYAHSIREYHSMISILGKMRKFDTAWNLIEEMRRGRTGPSLVTPQTLLIMIRKYCAVHDVARAINTFYAYKQFNFQVGLEEFHSLLSALCRYKNVQDAEHLLFCNKNLFPLDTKSFNIILNGWCNLIVSTSHAERIWHEMSKRRIQHDVVSYGSIISCYSKSSKLYKVLRMFDEMKKRKITPDRKVYNAVIYALAKGRLVKEAVNLIGTLEDNDVTPNVVTYNSLIKPLCKAGKVDEAKQLFYEILKRHLSPTIQTFHAFFRILRTKEEVFELLDKMKELGCYPTIETYIMLMRKFCRWRQLDDVFKMWDAMREDGIGHDRSSYIVLIHGLFLNGKLEEAHTYYAEMQEKGFLPEPKTEEMLQAWVSGKQATEGQETNLEPNQLENDTLKKKVKAIPSKFDREKAFLREPETRRVTRERGFSFWEQ*

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