SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma19g28441

Feature Type:gene_model
Chromosome:Gm19
Start:35928200
stop:35942772
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g28441
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G18280AT Annotation by Michelle Graham. TAIR10: apyrase 2 | chr5:6050799-6054875 REVERSE LENGTH=578 SoyBaseE_val: 0ISS
GO:0009846GO-bp Annotation by Michelle Graham. GO Biological Process: pollen germination SoyBaseN/AISS
GO:0005768GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endosome SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005802GO-cc Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0016787GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity SoyBaseN/AISS
GO:0016887GO-mf Annotation by Michelle Graham. GO Molecular Function: ATPase activity SoyBaseN/AISS
GO:0017110GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleoside-diphosphatase activity SoyBaseN/AISS
KOG1385 KOG Nucleoside phosphatase JGI ISS
PTHR11782Panther ADENOSINE/GUANOSINE DIPHOSPHATASE JGI ISS
PTHR11782:SF8Panther GUANOSINE-DIPHOSPHATASE JGI ISS
PF01150PFAM GDA1/CD39 (nucleoside phosphatase) family JGI ISS
UniRef100_I1ML51UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1ML51_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q5NT84UniRef Annotation by Michelle Graham. Most informative UniRef hit: Apyrase n=1 Tax=Vigna unguiculata subsp. unguiculata RepID=Q5NT84_VIGUU SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g28441
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g28441 not represented in the dataset
Glyma19g28441 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g28441
ParalogEvidenceComments
Glyma16g04790 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g28441 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g108500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g28441
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g28441
>Glyma19g28441.1   sequence type=CDS   gene model=Glyma19g28441   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGAAGCGCCCCGGCCGCCAGGAGTCCCTCGCCGACAAGATCTACCGGTTCCGGGGGACGCTGCTCGTCGTGGCGATCCCGCTTCTCCTCATCACCTTCGTCCTCTACGTCATGCCGTCCAGCATCTCTAACGAGTCCGTCGGAGGCTACGCCCTCGTTAACCGGAAAGTATCCCCCGTCGAGAAATCCGCCGGCTCCTACGCCGTCATCTTCGACGCCGGCAGCTCCGGCAGCCGCGTCCACGTCTTCCATTTCGATCACAACCTAGATCTCGTTCACATTGGCAAAGATCTCGAGCTTTTCGTCCAGAAAAAACCGGGTTTGAGTGCGTTCGCTAAGAATCCGAAACAGGCAGCGGAATCTTTGGTTTCGCTTTTGGAGGAAGCGGAGAGTGTTGTTCCTCGTGAATTGCGATCCAAGACACCAGTTCGAGTTGGGGCAACTGCGGGTTTGAGGGCTTTGGAAGGGGATGCATCGGATAGGATTTTGCAAGCGGTAAGGGATTTGCTTAAGGATAGGAGTAGCCTTAAATCTGAGAGTGATGCAGTTACGGTACTGGATGGAACACAAGAAGGTGCTTATCAATGGGTTACTATCAACTATCTATTGGGAAACTTGGGAAAAGATCATTCAAAGACTGTTGGGGTAGTTGATCTTGGAGGTGGATCTGTTCAAATGGCTTATGCCATCTCAGAGACAGATGCTGCCATGGCTCCAAAAGTAGCAGATGGCGGGGACCCATATGTCAAGGAGATGTTCCTGAGGGGAAGGAAATACTATCTTTATGTTCACAGTTACTTGCACTATGGTTTACTAGCTGCTCGTGCAGAGATTTTAAAGGCTTCTGATGATGCTGAAAACCCTTGTATCATATCTGGCTATGATGGATCCTACAATTATGGAGGAAAGTTGTTTAAGGCTTCATCCGGCTCTTCTGGAACAAGCTTAAATGAATGCAAAAGTGTTGCTCTTAGGGCTCTCAAAGTTAATGAGTCAACATGTACTCATATGAAGTGTACTTTTGGTGGGATATGGAATGGTGGAGGGGGGGATGGACAGAAGAACCTTTTTGTTGCCTCTTTCTTCTTTGACCGAGCTGTCGAGGCTGGTTTTGCTGATCCCAACTTGCCAGTCGCGATAGTTCGTCCTGCAGATTTTGAGGATGCAGCTAAGCAAGCATGTCAAACAGAACTTGAGAATGCCAAATCCACTTTTCCTCGTGTTGATGAGGGGAACCTTCCATATCTTTGCATGGATCTTATATACCAGTATACACTGCTTGTTGATGGGTTTGGCATATATCCATGGCAAGAGATTACATTGGTGAAGAAAGTTAAATACGATGATGCCCTGGTTGAGGCAGCATGGCCCCTAGGCAGCGCCATTGAAGCCGTGTCATCTACGTAA
Predicted protein sequences of Glyma19g28441
>Glyma19g28441.1   sequence type=predicted peptide   gene model=Glyma19g28441   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLKRPGRQESLADKIYRFRGTLLVVAIPLLLITFVLYVMPSSISNESVGGYALVNRKVSPVEKSAGSYAVIFDAGSSGSRVHVFHFDHNLDLVHIGKDLELFVQKKPGLSAFAKNPKQAAESLVSLLEEAESVVPRELRSKTPVRVGATAGLRALEGDASDRILQAVRDLLKDRSSLKSESDAVTVLDGTQEGAYQWVTINYLLGNLGKDHSKTVGVVDLGGGSVQMAYAISETDAAMAPKVADGGDPYVKEMFLRGRKYYLYVHSYLHYGLLAARAEILKASDDAENPCIISGYDGSYNYGGKLFKASSGSSGTSLNECKSVALRALKVNESTCTHMKCTFGGIWNGGGGDGQKNLFVASFFFDRAVEAGFADPNLPVAIVRPADFEDAAKQACQTELENAKSTFPRVDEGNLPYLCMDLIYQYTLLVDGFGIYPWQEITLVKKVKYDDALVEAAWPLGSAIEAVSST*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo