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Report for Sequence Feature Glyma19g28420

Feature Type:gene_model
Chromosome:Gm19
Start:35898918
stop:35902943
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G06660AT Annotation by Michelle Graham. TAIR10: Protein of unknown function DUF106, transmembrane | chr5:2046863-2047453 FORWARD LENGTH=196 SoyBaseE_val: 2.00E-99ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG3312 KOG Predicted membrane protein JGI ISS
PTHR20917Panther PNAS-RELATED JGI ISS
PF01956PFAM Integral membrane protein DUF106 JGI ISS
UniRef100_B7FGM9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transmembrane and coiled-coil domain-containing protein n=1 Tax=Medicago truncatula RepID=B7FGM9_MEDTR SoyBaseE_val: 4.00E-132ISS
UniRef100_C6TN19UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TN19_SOYBN SoyBaseE_val: 2.00E-133ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma16g04810 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g108300 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g28420.4   sequence type=transcript   gene model=Glyma19g28420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAGTTCAAGGATTCAAATGTGACGATCGACGAAGCCTTTTGAGTTGTGACAGTTTCATTATTATGATTTTAATTTAATTTGATTTTATAGCGACGAGACCAGCGAGCACCACCACCGCGACCGGCGAGCCCAGCCACCGTGTTCGACTTCGAATTGAGTCCGAGAAGGCTGTTAGATAGGCTTTTATATTGAAAACTGAGACTTGAAGGGAAGCGGTTATAATTGGCTTTGGACGTTTAAACAATTCCGATCAAGATCCAATTTTGCCTTCCCATTTTCTCGTCGTTTTTTTGTAACGGTCTTTCCATGGCATATCCCTTCTCTGATTTCAAGTACTCAGATGGCCTCAGTGTAGTGGGTATCTCCTTCTGCACAGCTATTGTCTGTGAGGCTATCTCATGGGTTCTTATCTATCGGACCAATTCTTACAAAAACCTTAGGTCCTCCATTGACAAAGCCTCCAAGAAACTTGAGACCATGAAGACTGACAGCAATAAAATCAACATCAAGAAGTCCAAGACCAAAAAAATTGACCGTGTTGAGACAAGCCTCAAAGAATCTAGCCGTGACCTGTCTCTCTTCAAGTTCAAGTCTGGGGGTGTGGTGGCTCTGGTTCTCTTTGTGGTCTTTGGGTTGCTGAATTCACTCTTCGAAGGCAAGGTTGTTGCCAAATTGCCCTTCAAACCTTTTGGGCTTATTATGAAGATGAGCCATCGAGGGTTGCAGGGTAATGACCCCACTGATTGTTCCATGGCATTTCTGTACTTCTTGTGTTCCATTAGCATCAGAACAAATTTGCAGAAGTTCTTGGGTTTTGCACCACCAAGAGGTGCAAGTGCTGGCCTCTTTCCAATGCCTGATCCAAAGACCAGTTGATTGGGTTTTTACAATATTTAAACTTTTTATCTCAGTTGTTTCTAGGTTGAAGATGATATGGAACTGCAAAACTTCAGTCATTTATATTTTTGATTTGGTTCTCTTAGGGAGTCCAGAATGATTTTAATTGGTACAACTGATACTGAAAACAGTCAACTCCAGTTTTACGATGGTGATTTTCTTGTTAAGTTTTGATTTAAGTGCAATAAAGACTCTTCGTCTATGGTACTAGGTTGCCCCCCC

>Glyma19g28420.5   sequence type=transcript   gene model=Glyma19g28420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAGTTCAAGGATTCAAATGTGACGATCGACGAAGCCTTTTGAGTTGTGACAGTTTCATTATTATGATTTTAATTTAATTTGATTTTATAGCGACGAGACCAGCGAGCACCACCACCGCGACCGGCGAGCCCAGCCACCGTGTTCGACTTCGAATTGAGTCCGAGAAGGCTGTTAGATAGGCTTTTATATTGAAAACTGAGACTTGAAGGGAAGCGGTTATAATTGGTCTGGTAAAACAATCCTGTTATTTTGTTGTAGAACACTTAAGTTTGTTCTTGATTAATGATTAGGGAATTGAATGAATTTGATCGATTTGTATCTTAGAAAACTCAAATTCTTGACTTGAACATTTAATATTTAACTGCAAAATAGTAATGACAAGTCCCAATTCACTATTGGTTCTTTTTGCACAAGACACATCCTCTTGCTGTCCGTTTTGTTAAACAGTAGCATGAAGATTTGATAAAATTAGCTACATATGGATACATTCTTTGGCTCTTATTTTCAAAGAAAATTGTTCTGTTTTAGCTTTTTGTTTCTGCACTTAGTCTTTATAAGTTCTATAATAAGCACATTGATTGACTGCAAGAAGCCTGAGCTTGTTAGCCTAGCTCTTTGATGATTGCTTATTGGTCTCAGAAGTTTTTCTGAGCTAATTAAGTTTACATCCCACTATTTTTAAAATTATCTCTACCAAATTTCTTCTACCTAAAACTATCAAATTGTCATTCTTTTATGCAAAATCCTTACGAAATTTAATCCATTAAATTGTTTTAAACCTTGTGCTCAAAATTCACCAACCAAAAAACATCACATTTCACCCAAAATAAAAAAACTCAAATTTTCTCCTCTTCACATTCTACTAAATCCTTCAAATTTTGTCATTTTTTTCACTAAATTTCTTGCTTCTAAACTTCTTAAATTATTTCATATCCCGAATCCATCATAAACCCCTAAATATATAGTTAGAAAATGATAATTTGAAGGTTTTTGATGAAAGAAGACTAACAGAAAGACCAAATTTAGTTAATTATAAAAAATTGAGGGACATAAATGGCTTGTAAAAAACTTGGGGGGACCAAAATTGCTCCATTTAAAGCAACTAAAAGTGCAATTAAGCCTTGTTCAAACATAAAGAGATATTGAAATGAATTAGATTCAGGTTAATCTGTGATAAATTGTTCAGTAATTTGGAGATAGTTGGTATTTCCATAATTTTATTTTTATTTTTTCAAGCTTATGTTATACTACATGCTAAGTTGCTGCTGCTTTTTATTTTTATTTTTTTAATTTTTTTTAATTGTCAAAGGCTTTTATCGTTATGGTTTGTGGTGTTGATGGACAATAGTTGTTCAAATTTCTAACCAATATGGAAATTAGGTTCATGCTAATCTGTGATACATTAGTTATGTTAGTTGGAGATAATTGATGTTTCTTTAATTGACGTTTCAAGCTTATGTTAAACTACATGGTATGGACTAATAGTATGCTACATACAATGCTGCTATTTTTCTTTACTTTTTTTTGGCTTAAATGGTTGAAGGTTATTATTCATTGGGTAAATAACATTGCCTTTCCGCAAGAGATGCTTAAATTACGTTGTCCTTTCTATAATTTAAAAAAATTACAATCCCCATCCCTAAAAGATGGAATGTGCTACACTTTAGTCCATTTTAATGTAAACAAACCTCTTGTGGTTAGTAGAGTGAGCCACAGGAACATTTTTCCTGTGTAACTTTTGGTACCACCTCTAGCTAATTTTGAACATCCTATTATCAAATTTTAAAACTTTAGAAACTCCTACTGCTATCTTCCGGATTTTACTTAAAAAAATCTTCATTCCAACTTCTGAAGTCTCAAAGTTGATAATAAGTATTTAAAACTAGCTGCTACTGATGCTTTGAGTTACCGAGATAGAGAAAATATGCTTAAGAGGCTTGTTCACACTAAAACAAACTAAAGCATAACATATGAAGTAGAGGGAAGTGCTATTTTCAAAAGAGGAGGGAGGTCAGTGTAAATTAAGCATTTTTTTGGAGAAGGTGAATGTAATTTGCCCTATTTATTGTTCTGTTCTTTTAATGAGGAGTTATATAATGTGTGATTAAATGTTTTCTTATTTATACAGGCTTTGGACGTTTAAACAATTCCGATCAAGATCCAATTTTGCCTTCCCATTTTCTCGTCGTTTTTTTGTAACGGTCTTTCCATGGCATATCCCTTCTCTGATTTCAAGTACTCAGATGGCCTCAGTGTAGTGGGTATCTCCTTCTGCACAGCTATTGTCTGTGAGGCTATCTCATGGGTTCTTATCTATCGGACCAATTCTTACAAAAACCTTAGGTCCTCCATTGACAAAGCCTCCAAGAAACTTGAGACCATGAAGACTGACAGCAATAAAATCAACATCAAGAAGTCCAAGACCAAAAAAATTGACCGTGTTGAGACAAGCCTCAAAGAATCTAGCCGTGACCTGTCTCTCTTCAAGTTCAAGTCTGGGGGTGTGGTGGCTCTGGTTCTCTTTGTGGTCTTTGGGTTGCTGAATTCACTCTTCGAAGGCAAGGTTGTTGCCAAATTGCCCTTCAAACCTTTTGGGCTTATTATGAAGATGAGCCATCGAGGGTTGCAGGGTAATGACCCCACTGATTGTTCCATGGCATTTCTGTACTTCTTGTGTTCCATTAGCATCAGAACAAATTTGCAGAAGTTCTTGGGTTTTGCACCACCAAGAGGTGCAAGTGCTGGCCTCTTTCCAATGCCTGATCCAAAGACCAGTTGATTGGGTTTTTACAATATTTAAACTTTTTATCTCAGTTGTTTCTAGGTTGAAGATGATATGGAACTGCAAAACTTCAGTCATTTATATTTTTGATTTGGTTCTCTTAGGGAGTCCAGAATGATTTTAATTGGTACAACTGATACTGAAAACAGTCAACTCCAGTTTTACGATGGTGATTTTCTTGTTAAGTTTTGATTTAAGTGCAATAAAGACTCTTCGTCTATGGTACTAGGTTGCCCCCCC

>Glyma19g28420.6   sequence type=transcript   gene model=Glyma19g28420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAGTTCAAGGATTCAAATGTGACGATCGACGAAGCCTTTTGAGTTGTGACAGTTTCATTATTATGATTTTAATTTAATTTGATTTTATAGCGACGAGACCAGCGAGCACCACCACCGCGACCGGCGAGCCCAGCCACCGTGTTCGACTTCGAATTGAGTCCGAGAAGGCTGTTAGATAGGCTTTGGACGTTTAAACAATTCCGATCAAGATCCAATTTTGCCTTCCCATTTTCTCGTCGTTTTTTTGTAACGGTCTTTCCATGGCATATCCCTTCTCTGATTTCAAGTACTCAGATGGCCTCAGTGTAGTGGGTATCTCCTTCTGCACAGCTATTGTCTGTGAGGCTATCTCATGGGTTCTTATCTATCGGACCAATTCTTACAAAAACCTTAGGTCCTCCATTGACAAAGCCTCCAAGAAACTTGAGACCATGAAGACTGACAGCAATAAAATCAACATCAAGAAGTCCAAGACCAAAAAAATTGACCGTGTTGAGACAAGCCTCAAAGAATCTAGCCGTGACCTGTCTCTCTTCAAGTTCAAGTCTGGGGGTGTGGTGGCTCTGGTTCTCTTTGTGGTCTTTGGGTTGCTGAATTCACTCTTCGAAGGCAAGGTTGTTGCCAAATTGCCCTTCAAACCTTTTGGGCTTATTATGAAGATGAGCCATCGAGGGTTGCAGGGTAATGACCCCACTGATTGTTCCATGGCATTTCTGTACTTCTTGTGTTCCATTAGCATCAGAACAAATTTGCAGAAGTTCTTGGGTTTTGCACCACCAAGAGGTGCAAGTGCTGGCCTCTTTCCAATGCCTGATCCAAAGACCAGTTGATTGGGTTTTTACAATATTTAAACTTTTTATCTCAGTTGTTTCTAGGTTGAAGATGATATGGAACTGCAAAACTTCAGTCATTTATATTTTTGATTTGGTTCTCTTAGGGAGTCCAGAATGATTTTAATTGGTACAACTGATACTGAAAACAGTCAACTCCAGTTTTACGATGGTGATTTTCTTGTTAAGTTTTGATTTAAGTGCAATAAAGACTCTTCGTCTATGGTACTAGGTTGCCCCCCC

>Glyma19g28420.3   sequence type=CDS   gene model=Glyma19g28420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATATCCCTTCTCTGATTTCAAGTACTCAGATGGCCTCAGTGTAGTGGGTATCTCCTTCTGCACAGCTATTGTCTGTGAGGCTATCTCATGGGTTCTTATCTATCGGACCAATTCTTACAAAAACCTTAGGTCCTCCATTGACAAAGCCTCCAAGAAACTTGAGACCATGAAGACTGACAGCAATAAAATCAACATCAAGAAGTCCAAGACCAAAAAAATTGACCGTGTTGAGACAAGCCTCAAAGAATCTAGCCGTGACCTGTCTCTCTTCAAGTTCAAGTCTGGGGGTGTGGTGGCTCTGGTTCTCTTTGTGGTCTTTGGGTTGCTGAATTCACTCTTCGAAGGCAAGGTTGTTGCCAAATTGCCCTTCAAACCTTTTGGGCTTATTATGAAGATGAGCCATCGAGGGTTGCAGGGTAATGACCCCACTGATTGTTCCATGGCATTTCTGTACTTCTTGTGTTCCATTAGCATCAGAACAAATTTGCAGAAGTTCTTGGGTTTTGCACCACCAAGAGGTGCAAGTGCTGGCCTCTTTCCAATGCCTGATCCAAAGACCAGTTGA

>Glyma19g28420.4   sequence type=CDS   gene model=Glyma19g28420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATATCCCTTCTCTGATTTCAAGTACTCAGATGGCCTCAGTGTAGTGGGTATCTCCTTCTGCACAGCTATTGTCTGTGAGGCTATCTCATGGGTTCTTATCTATCGGACCAATTCTTACAAAAACCTTAGGTCCTCCATTGACAAAGCCTCCAAGAAACTTGAGACCATGAAGACTGACAGCAATAAAATCAACATCAAGAAGTCCAAGACCAAAAAAATTGACCGTGTTGAGACAAGCCTCAAAGAATCTAGCCGTGACCTGTCTCTCTTCAAGTTCAAGTCTGGGGGTGTGGTGGCTCTGGTTCTCTTTGTGGTCTTTGGGTTGCTGAATTCACTCTTCGAAGGCAAGGTTGTTGCCAAATTGCCCTTCAAACCTTTTGGGCTTATTATGAAGATGAGCCATCGAGGGTTGCAGGGTAATGACCCCACTGATTGTTCCATGGCATTTCTGTACTTCTTGTGTTCCATTAGCATCAGAACAAATTTGCAGAAGTTCTTGGGTTTTGCACCACCAAGAGGTGCAAGTGCTGGCCTCTTTCCAATGCCTGATCCAAAGACCAGTTGA

>Glyma19g28420.5   sequence type=CDS   gene model=Glyma19g28420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATATCCCTTCTCTGATTTCAAGTACTCAGATGGCCTCAGTGTAGTGGGTATCTCCTTCTGCACAGCTATTGTCTGTGAGGCTATCTCATGGGTTCTTATCTATCGGACCAATTCTTACAAAAACCTTAGGTCCTCCATTGACAAAGCCTCCAAGAAACTTGAGACCATGAAGACTGACAGCAATAAAATCAACATCAAGAAGTCCAAGACCAAAAAAATTGACCGTGTTGAGACAAGCCTCAAAGAATCTAGCCGTGACCTGTCTCTCTTCAAGTTCAAGTCTGGGGGTGTGGTGGCTCTGGTTCTCTTTGTGGTCTTTGGGTTGCTGAATTCACTCTTCGAAGGCAAGGTTGTTGCCAAATTGCCCTTCAAACCTTTTGGGCTTATTATGAAGATGAGCCATCGAGGGTTGCAGGGTAATGACCCCACTGATTGTTCCATGGCATTTCTGTACTTCTTGTGTTCCATTAGCATCAGAACAAATTTGCAGAAGTTCTTGGGTTTTGCACCACCAAGAGGTGCAAGTGCTGGCCTCTTTCCAATGCCTGATCCAAAGACCAGTTGA

>Glyma19g28420.6   sequence type=CDS   gene model=Glyma19g28420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATATCCCTTCTCTGATTTCAAGTACTCAGATGGCCTCAGTGTAGTGGGTATCTCCTTCTGCACAGCTATTGTCTGTGAGGCTATCTCATGGGTTCTTATCTATCGGACCAATTCTTACAAAAACCTTAGGTCCTCCATTGACAAAGCCTCCAAGAAACTTGAGACCATGAAGACTGACAGCAATAAAATCAACATCAAGAAGTCCAAGACCAAAAAAATTGACCGTGTTGAGACAAGCCTCAAAGAATCTAGCCGTGACCTGTCTCTCTTCAAGTTCAAGTCTGGGGGTGTGGTGGCTCTGGTTCTCTTTGTGGTCTTTGGGTTGCTGAATTCACTCTTCGAAGGCAAGGTTGTTGCCAAATTGCCCTTCAAACCTTTTGGGCTTATTATGAAGATGAGCCATCGAGGGTTGCAGGGTAATGACCCCACTGATTGTTCCATGGCATTTCTGTACTTCTTGTGTTCCATTAGCATCAGAACAAATTTGCAGAAGTTCTTGGGTTTTGCACCACCAAGAGGTGCAAGTGCTGGCCTCTTTCCAATGCCTGATCCAAAGACCAGTTGA

>Glyma19g28420.3   sequence type=predicted peptide   gene model=Glyma19g28420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAYPFSDFKYSDGLSVVGISFCTAIVCEAISWVLIYRTNSYKNLRSSIDKASKKLETMKTDSNKINIKKSKTKKIDRVETSLKESSRDLSLFKFKSGGVVALVLFVVFGLLNSLFEGKVVAKLPFKPFGLIMKMSHRGLQGNDPTDCSMAFLYFLCSISIRTNLQKFLGFAPPRGASAGLFPMPDPKTS*

>Glyma19g28420.4   sequence type=predicted peptide   gene model=Glyma19g28420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAYPFSDFKYSDGLSVVGISFCTAIVCEAISWVLIYRTNSYKNLRSSIDKASKKLETMKTDSNKINIKKSKTKKIDRVETSLKESSRDLSLFKFKSGGVVALVLFVVFGLLNSLFEGKVVAKLPFKPFGLIMKMSHRGLQGNDPTDCSMAFLYFLCSISIRTNLQKFLGFAPPRGASAGLFPMPDPKTS*

>Glyma19g28420.5   sequence type=predicted peptide   gene model=Glyma19g28420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAYPFSDFKYSDGLSVVGISFCTAIVCEAISWVLIYRTNSYKNLRSSIDKASKKLETMKTDSNKINIKKSKTKKIDRVETSLKESSRDLSLFKFKSGGVVALVLFVVFGLLNSLFEGKVVAKLPFKPFGLIMKMSHRGLQGNDPTDCSMAFLYFLCSISIRTNLQKFLGFAPPRGASAGLFPMPDPKTS*

>Glyma19g28420.6   sequence type=predicted peptide   gene model=Glyma19g28420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAYPFSDFKYSDGLSVVGISFCTAIVCEAISWVLIYRTNSYKNLRSSIDKASKKLETMKTDSNKINIKKSKTKKIDRVETSLKESSRDLSLFKFKSGGVVALVLFVVFGLLNSLFEGKVVAKLPFKPFGLIMKMSHRGLQGNDPTDCSMAFLYFLCSISIRTNLQKFLGFAPPRGASAGLFPMPDPKTS*







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