Report for Sequence Feature Glyma19g28420
Feature Type: gene_model
Chromosome: Gm19
Start: 35898918
stop: 35902943
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g28420
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G06660 AT
Annotation by Michelle Graham. TAIR10: Protein of unknown function DUF106, transmembrane | chr5:2046863-2047453 FORWARD LENGTH=196
SoyBase E_val: 2.00E-99 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG3312
KOG
Predicted membrane protein
JGI ISS
PTHR20917 Panther
PNAS-RELATED
JGI ISS
PF01956 PFAM
Integral membrane protein DUF106
JGI ISS
UniRef100_B7FGM9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Transmembrane and coiled-coil domain-containing protein n=1 Tax=Medicago truncatula RepID=B7FGM9_MEDTR
SoyBase E_val: 4.00E-132 ISS
UniRef100_C6TN19 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TN19_SOYBN
SoyBase E_val: 2.00E-133 ISS
Expression Patterns of Glyma19g28420
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma19g28420
Paralog Evidence Comments
Glyma16g04810 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g28420 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g108300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g28420
Transcripts of Glyma19g28420
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g28420.4 sequence type=transcript gene model=Glyma19g28420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
CAGTTCAAGGATTCAAATGTGACGATCGACGAAGCCTTTTGAGTTGTGACAGTTTCATTATTATGATTTTAATTTAATTTGATTTTATAGCGACGAGACCAGCGAGCACCACCACCGCGACCGGCGAGCCCAGCCACCGTGTTCGACTTCGAATTGAGTCCGAGAAGGCTGTTAGATAGGCTTTTATATTGAAAACTGAGACTTGAAGGGAAGCGGTTATAATTGGCTTTGGACGTTTAAACAATTCCGATCAAGATCCAATTTTGCCTTCCCATTTTCTCGTCGTTTTTTTGTAACGGTCTTTCCATGGCATATCCCTTCTCTGATTTCAAGTACTCAGATGGCCTCAGTGTAGTGGGTATCTCCTTCTGCACAGCTATTGTCTGTGAGGCTATCTCATGGGTTCTTATCTATCGGACCAATTCTTACAAAAACCTTAGGTCCTCCATTGACAAAGCCTCCAAGAAACTTGAGACCATGAAGACTGACAGCAATAAAATCAACATCAAGAAGTCCAAGACCAAAAAAATTGACCGTGTTGAGACAAGCCTCAAAGAATCTAGCCGTGACCTGTCTCTCTTCAAGTTCAAGTCTGGGGGTGTGGTGGCTCTGGTTCTCTTTGTGGTCTTTGGGTTGCTGAATTCACTCTTCGAAGGCAAGGTTGTTGCCAAATTGCCCTTCAAACCTTTTGGGCTTATTATGAAGATGAGCCATCGAGGGTTGCAGGGTAATGACCCCACTGATTGTTCCATGGCATTTCTGTACTTCTTGTGTTCCATTAGCATCAGAACAAATTTGCAGAAGTTCTTGGGTTTTGCACCACCAAGAGGTGCAAGTGCTGGCCTCTTTCCAATGCCTGATCCAAAGACCAGTTGATTGGGTTTTTACAATATTTAAACTTTTTATCTCAGTTGTTTCTAGGTTGAAGATGATATGGAACTGCAAAACTTCAGTCATTTATATTTTTGATTTGGTTCTCTTAGGGAGTCCAGAATGATTTTAATTGGTACAACTGATACTGAAAACAGTCAACTCCAGTTTTACGATGGTGATTTTCTTGTTAAGTTTTGATTTAAGTGCAATAAAGACTCTTCGTCTATGGTACTAGGTTGCCCCCCC
>Glyma19g28420.5 sequence type=transcript gene model=Glyma19g28420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
CAGTTCAAGGATTCAAATGTGACGATCGACGAAGCCTTTTGAGTTGTGACAGTTTCATTATTATGATTTTAATTTAATTTGATTTTATAGCGACGAGACCAGCGAGCACCACCACCGCGACCGGCGAGCCCAGCCACCGTGTTCGACTTCGAATTGAGTCCGAGAAGGCTGTTAGATAGGCTTTTATATTGAAAACTGAGACTTGAAGGGAAGCGGTTATAATTGGTCTGGTAAAACAATCCTGTTATTTTGTTGTAGAACACTTAAGTTTGTTCTTGATTAATGATTAGGGAATTGAATGAATTTGATCGATTTGTATCTTAGAAAACTCAAATTCTTGACTTGAACATTTAATATTTAACTGCAAAATAGTAATGACAAGTCCCAATTCACTATTGGTTCTTTTTGCACAAGACACATCCTCTTGCTGTCCGTTTTGTTAAACAGTAGCATGAAGATTTGATAAAATTAGCTACATATGGATACATTCTTTGGCTCTTATTTTCAAAGAAAATTGTTCTGTTTTAGCTTTTTGTTTCTGCACTTAGTCTTTATAAGTTCTATAATAAGCACATTGATTGACTGCAAGAAGCCTGAGCTTGTTAGCCTAGCTCTTTGATGATTGCTTATTGGTCTCAGAAGTTTTTCTGAGCTAATTAAGTTTACATCCCACTATTTTTAAAATTATCTCTACCAAATTTCTTCTACCTAAAACTATCAAATTGTCATTCTTTTATGCAAAATCCTTACGAAATTTAATCCATTAAATTGTTTTAAACCTTGTGCTCAAAATTCACCAACCAAAAAACATCACATTTCACCCAAAATAAAAAAACTCAAATTTTCTCCTCTTCACATTCTACTAAATCCTTCAAATTTTGTCATTTTTTTCACTAAATTTCTTGCTTCTAAACTTCTTAAATTATTTCATATCCCGAATCCATCATAAACCCCTAAATATATAGTTAGAAAATGATAATTTGAAGGTTTTTGATGAAAGAAGACTAACAGAAAGACCAAATTTAGTTAATTATAAAAAATTGAGGGACATAAATGGCTTGTAAAAAACTTGGGGGGACCAAAATTGCTCCATTTAAAGCAACTAAAAGTGCAATTAAGCCTTGTTCAAACATAAAGAGATATTGAAATGAATTAGATTCAGGTTAATCTGTGATAAATTGTTCAGTAATTTGGAGATAGTTGGTATTTCCATAATTTTATTTTTATTTTTTCAAGCTTATGTTATACTACATGCTAAGTTGCTGCTGCTTTTTATTTTTATTTTTTTAATTTTTTTTAATTGTCAAAGGCTTTTATCGTTATGGTTTGTGGTGTTGATGGACAATAGTTGTTCAAATTTCTAACCAATATGGAAATTAGGTTCATGCTAATCTGTGATACATTAGTTATGTTAGTTGGAGATAATTGATGTTTCTTTAATTGACGTTTCAAGCTTATGTTAAACTACATGGTATGGACTAATAGTATGCTACATACAATGCTGCTATTTTTCTTTACTTTTTTTTGGCTTAAATGGTTGAAGGTTATTATTCATTGGGTAAATAACATTGCCTTTCCGCAAGAGATGCTTAAATTACGTTGTCCTTTCTATAATTTAAAAAAATTACAATCCCCATCCCTAAAAGATGGAATGTGCTACACTTTAGTCCATTTTAATGTAAACAAACCTCTTGTGGTTAGTAGAGTGAGCCACAGGAACATTTTTCCTGTGTAACTTTTGGTACCACCTCTAGCTAATTTTGAACATCCTATTATCAAATTTTAAAACTTTAGAAACTCCTACTGCTATCTTCCGGATTTTACTTAAAAAAATCTTCATTCCAACTTCTGAAGTCTCAAAGTTGATAATAAGTATTTAAAACTAGCTGCTACTGATGCTTTGAGTTACCGAGATAGAGAAAATATGCTTAAGAGGCTTGTTCACACTAAAACAAACTAAAGCATAACATATGAAGTAGAGGGAAGTGCTATTTTCAAAAGAGGAGGGAGGTCAGTGTAAATTAAGCATTTTTTTGGAGAAGGTGAATGTAATTTGCCCTATTTATTGTTCTGTTCTTTTAATGAGGAGTTATATAATGTGTGATTAAATGTTTTCTTATTTATACAGGCTTTGGACGTTTAAACAATTCCGATCAAGATCCAATTTTGCCTTCCCATTTTCTCGTCGTTTTTTTGTAACGGTCTTTCCATGGCATATCCCTTCTCTGATTTCAAGTACTCAGATGGCCTCAGTGTAGTGGGTATCTCCTTCTGCACAGCTATTGTCTGTGAGGCTATCTCATGGGTTCTTATCTATCGGACCAATTCTTACAAAAACCTTAGGTCCTCCATTGACAAAGCCTCCAAGAAACTTGAGACCATGAAGACTGACAGCAATAAAATCAACATCAAGAAGTCCAAGACCAAAAAAATTGACCGTGTTGAGACAAGCCTCAAAGAATCTAGCCGTGACCTGTCTCTCTTCAAGTTCAAGTCTGGGGGTGTGGTGGCTCTGGTTCTCTTTGTGGTCTTTGGGTTGCTGAATTCACTCTTCGAAGGCAAGGTTGTTGCCAAATTGCCCTTCAAACCTTTTGGGCTTATTATGAAGATGAGCCATCGAGGGTTGCAGGGTAATGACCCCACTGATTGTTCCATGGCATTTCTGTACTTCTTGTGTTCCATTAGCATCAGAACAAATTTGCAGAAGTTCTTGGGTTTTGCACCACCAAGAGGTGCAAGTGCTGGCCTCTTTCCAATGCCTGATCCAAAGACCAGTTGATTGGGTTTTTACAATATTTAAACTTTTTATCTCAGTTGTTTCTAGGTTGAAGATGATATGGAACTGCAAAACTTCAGTCATTTATATTTTTGATTTGGTTCTCTTAGGGAGTCCAGAATGATTTTAATTGGTACAACTGATACTGAAAACAGTCAACTCCAGTTTTACGATGGTGATTTTCTTGTTAAGTTTTGATTTAAGTGCAATAAAGACTCTTCGTCTATGGTACTAGGTTGCCCCCCC
>Glyma19g28420.6 sequence type=transcript gene model=Glyma19g28420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
CAGTTCAAGGATTCAAATGTGACGATCGACGAAGCCTTTTGAGTTGTGACAGTTTCATTATTATGATTTTAATTTAATTTGATTTTATAGCGACGAGACCAGCGAGCACCACCACCGCGACCGGCGAGCCCAGCCACCGTGTTCGACTTCGAATTGAGTCCGAGAAGGCTGTTAGATAGGCTTTGGACGTTTAAACAATTCCGATCAAGATCCAATTTTGCCTTCCCATTTTCTCGTCGTTTTTTTGTAACGGTCTTTCCATGGCATATCCCTTCTCTGATTTCAAGTACTCAGATGGCCTCAGTGTAGTGGGTATCTCCTTCTGCACAGCTATTGTCTGTGAGGCTATCTCATGGGTTCTTATCTATCGGACCAATTCTTACAAAAACCTTAGGTCCTCCATTGACAAAGCCTCCAAGAAACTTGAGACCATGAAGACTGACAGCAATAAAATCAACATCAAGAAGTCCAAGACCAAAAAAATTGACCGTGTTGAGACAAGCCTCAAAGAATCTAGCCGTGACCTGTCTCTCTTCAAGTTCAAGTCTGGGGGTGTGGTGGCTCTGGTTCTCTTTGTGGTCTTTGGGTTGCTGAATTCACTCTTCGAAGGCAAGGTTGTTGCCAAATTGCCCTTCAAACCTTTTGGGCTTATTATGAAGATGAGCCATCGAGGGTTGCAGGGTAATGACCCCACTGATTGTTCCATGGCATTTCTGTACTTCTTGTGTTCCATTAGCATCAGAACAAATTTGCAGAAGTTCTTGGGTTTTGCACCACCAAGAGGTGCAAGTGCTGGCCTCTTTCCAATGCCTGATCCAAAGACCAGTTGATTGGGTTTTTACAATATTTAAACTTTTTATCTCAGTTGTTTCTAGGTTGAAGATGATATGGAACTGCAAAACTTCAGTCATTTATATTTTTGATTTGGTTCTCTTAGGGAGTCCAGAATGATTTTAATTGGTACAACTGATACTGAAAACAGTCAACTCCAGTTTTACGATGGTGATTTTCTTGTTAAGTTTTGATTTAAGTGCAATAAAGACTCTTCGTCTATGGTACTAGGTTGCCCCCCC
Coding sequences of Glyma19g28420
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g28420.3 sequence type=CDS gene model=Glyma19g28420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCATATCCCTTCTCTGATTTCAAGTACTCAGATGGCCTCAGTGTAGTGGGTATCTCCTTCTGCACAGCTATTGTCTGTGAGGCTATCTCATGGGTTCTTATCTATCGGACCAATTCTTACAAAAACCTTAGGTCCTCCATTGACAAAGCCTCCAAGAAACTTGAGACCATGAAGACTGACAGCAATAAAATCAACATCAAGAAGTCCAAGACCAAAAAAATTGACCGTGTTGAGACAAGCCTCAAAGAATCTAGCCGTGACCTGTCTCTCTTCAAGTTCAAGTCTGGGGGTGTGGTGGCTCTGGTTCTCTTTGTGGTCTTTGGGTTGCTGAATTCACTCTTCGAAGGCAAGGTTGTTGCCAAATTGCCCTTCAAACCTTTTGGGCTTATTATGAAGATGAGCCATCGAGGGTTGCAGGGTAATGACCCCACTGATTGTTCCATGGCATTTCTGTACTTCTTGTGTTCCATTAGCATCAGAACAAATTTGCAGAAGTTCTTGGGTTTTGCACCACCAAGAGGTGCAAGTGCTGGCCTCTTTCCAATGCCTGATCCAAAGACCAGTTGA
>Glyma19g28420.4 sequence type=CDS gene model=Glyma19g28420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCATATCCCTTCTCTGATTTCAAGTACTCAGATGGCCTCAGTGTAGTGGGTATCTCCTTCTGCACAGCTATTGTCTGTGAGGCTATCTCATGGGTTCTTATCTATCGGACCAATTCTTACAAAAACCTTAGGTCCTCCATTGACAAAGCCTCCAAGAAACTTGAGACCATGAAGACTGACAGCAATAAAATCAACATCAAGAAGTCCAAGACCAAAAAAATTGACCGTGTTGAGACAAGCCTCAAAGAATCTAGCCGTGACCTGTCTCTCTTCAAGTTCAAGTCTGGGGGTGTGGTGGCTCTGGTTCTCTTTGTGGTCTTTGGGTTGCTGAATTCACTCTTCGAAGGCAAGGTTGTTGCCAAATTGCCCTTCAAACCTTTTGGGCTTATTATGAAGATGAGCCATCGAGGGTTGCAGGGTAATGACCCCACTGATTGTTCCATGGCATTTCTGTACTTCTTGTGTTCCATTAGCATCAGAACAAATTTGCAGAAGTTCTTGGGTTTTGCACCACCAAGAGGTGCAAGTGCTGGCCTCTTTCCAATGCCTGATCCAAAGACCAGTTGA
>Glyma19g28420.5 sequence type=CDS gene model=Glyma19g28420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCATATCCCTTCTCTGATTTCAAGTACTCAGATGGCCTCAGTGTAGTGGGTATCTCCTTCTGCACAGCTATTGTCTGTGAGGCTATCTCATGGGTTCTTATCTATCGGACCAATTCTTACAAAAACCTTAGGTCCTCCATTGACAAAGCCTCCAAGAAACTTGAGACCATGAAGACTGACAGCAATAAAATCAACATCAAGAAGTCCAAGACCAAAAAAATTGACCGTGTTGAGACAAGCCTCAAAGAATCTAGCCGTGACCTGTCTCTCTTCAAGTTCAAGTCTGGGGGTGTGGTGGCTCTGGTTCTCTTTGTGGTCTTTGGGTTGCTGAATTCACTCTTCGAAGGCAAGGTTGTTGCCAAATTGCCCTTCAAACCTTTTGGGCTTATTATGAAGATGAGCCATCGAGGGTTGCAGGGTAATGACCCCACTGATTGTTCCATGGCATTTCTGTACTTCTTGTGTTCCATTAGCATCAGAACAAATTTGCAGAAGTTCTTGGGTTTTGCACCACCAAGAGGTGCAAGTGCTGGCCTCTTTCCAATGCCTGATCCAAAGACCAGTTGA
>Glyma19g28420.6 sequence type=CDS gene model=Glyma19g28420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCATATCCCTTCTCTGATTTCAAGTACTCAGATGGCCTCAGTGTAGTGGGTATCTCCTTCTGCACAGCTATTGTCTGTGAGGCTATCTCATGGGTTCTTATCTATCGGACCAATTCTTACAAAAACCTTAGGTCCTCCATTGACAAAGCCTCCAAGAAACTTGAGACCATGAAGACTGACAGCAATAAAATCAACATCAAGAAGTCCAAGACCAAAAAAATTGACCGTGTTGAGACAAGCCTCAAAGAATCTAGCCGTGACCTGTCTCTCTTCAAGTTCAAGTCTGGGGGTGTGGTGGCTCTGGTTCTCTTTGTGGTCTTTGGGTTGCTGAATTCACTCTTCGAAGGCAAGGTTGTTGCCAAATTGCCCTTCAAACCTTTTGGGCTTATTATGAAGATGAGCCATCGAGGGTTGCAGGGTAATGACCCCACTGATTGTTCCATGGCATTTCTGTACTTCTTGTGTTCCATTAGCATCAGAACAAATTTGCAGAAGTTCTTGGGTTTTGCACCACCAAGAGGTGCAAGTGCTGGCCTCTTTCCAATGCCTGATCCAAAGACCAGTTGA
Predicted protein sequences of Glyma19g28420
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g28420.3 sequence type=predicted peptide gene model=Glyma19g28420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAYPFSDFKYSDGLSVVGISFCTAIVCEAISWVLIYRTNSYKNLRSSIDKASKKLETMKTDSNKINIKKSKTKKIDRVETSLKESSRDLSLFKFKSGGVVALVLFVVFGLLNSLFEGKVVAKLPFKPFGLIMKMSHRGLQGNDPTDCSMAFLYFLCSISIRTNLQKFLGFAPPRGASAGLFPMPDPKTS*
>Glyma19g28420.4 sequence type=predicted peptide gene model=Glyma19g28420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAYPFSDFKYSDGLSVVGISFCTAIVCEAISWVLIYRTNSYKNLRSSIDKASKKLETMKTDSNKINIKKSKTKKIDRVETSLKESSRDLSLFKFKSGGVVALVLFVVFGLLNSLFEGKVVAKLPFKPFGLIMKMSHRGLQGNDPTDCSMAFLYFLCSISIRTNLQKFLGFAPPRGASAGLFPMPDPKTS*
>Glyma19g28420.5 sequence type=predicted peptide gene model=Glyma19g28420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAYPFSDFKYSDGLSVVGISFCTAIVCEAISWVLIYRTNSYKNLRSSIDKASKKLETMKTDSNKINIKKSKTKKIDRVETSLKESSRDLSLFKFKSGGVVALVLFVVFGLLNSLFEGKVVAKLPFKPFGLIMKMSHRGLQGNDPTDCSMAFLYFLCSISIRTNLQKFLGFAPPRGASAGLFPMPDPKTS*
>Glyma19g28420.6 sequence type=predicted peptide gene model=Glyma19g28420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAYPFSDFKYSDGLSVVGISFCTAIVCEAISWVLIYRTNSYKNLRSSIDKASKKLETMKTDSNKINIKKSKTKKIDRVETSLKESSRDLSLFKFKSGGVVALVLFVVFGLLNSLFEGKVVAKLPFKPFGLIMKMSHRGLQGNDPTDCSMAFLYFLCSISIRTNLQKFLGFAPPRGASAGLFPMPDPKTS*