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Report for Sequence Feature Glyma19g28312

Feature Type:gene_model
Chromosome:Gm19
Start:35710595
stop:35711897
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g28312
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G26618AT Annotation by Michelle Graham. TAIR10: eukaryotic release factor 1-3 | chr3:9788854-9790161 FORWARD LENGTH=435 SoyBaseE_val: 0ISS
GO:0006415GO-bp Annotation by Michelle Graham. GO Biological Process: translational termination SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0003747GO-mf Annotation by Michelle Graham. GO Molecular Function: translation release factor activity SoyBaseN/AISS
GO:0016149GO-mf Annotation by Michelle Graham. GO Molecular Function: translation release factor activity, codon specific SoyBaseN/AISS
KOG0688 KOG Peptide chain release factor 1 (eRF1) JGI ISS
PTHR10113Panther PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 JGI ISS
PF03463PFAM eRF1 domain 1 JGI ISS
PF03464PFAM eRF1 domain 2 JGI ISS
PF03465PFAM eRF1 domain 3 JGI ISS
UniRef100_G7KYC6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Eukaryotic peptide chain release factor subunit 1-1 n=1 Tax=Medicago truncatula RepID=G7KYC6_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1JD21UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JD21_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g28312
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g28312 not represented in the dataset
Glyma19g28312 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g28312 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g107400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g28312
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g28312
>Glyma19g28312.1   sequence type=CDS   gene model=Glyma19g28312   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGATGGTGAATCTGACAAGAACATTGAGATATGGAAGATCAAGAAATTGATCAGAGCATTGGAATCTGCAAGAGGTAATGGCACCAGCATGATTTCTCTGATTATGCCCCCACGTGATCAAATATCTCATGTCACTAAGATGCTGGGAGATGAGTTTGGAACTGCTTCAAATATCAAAAGCAGGATGGCAAGGAAAAAAAAGGTGACAATTGATTTTGAACCTTTCAAGCCTATCAATGCATCACTTTACCTCTGTGATAACAAGTTTCACATAGAAGCTCTAAATGAACTTTTAGAATCAGATGACAAGTTTGGTTTTATTATTATGGATGGGAACGACACCCTTTTTGGGACATTAACTGGAAACACTCGTGAGGTGCTTCATAAATTTACTGTTGATCTACCAAAGAAGCATGGTCGAGGAGGGCAGTCAGCATTGTGTTTTGCTTGTCTTCGCATGGAAAAGCGGCACAACTATGTCAGGAACACTGCAGAACTTGCTACTCAGTTTTTCATCAATCCTGCTACTAGTCAACCTAATGTTTCTGGACTTATACTTGCTGGTTCAGTTGGCTTCAAGACTGAGCTGAGCCAGTCAGATATGTTCAATCCTCGTTTGCAAGCAAAAATATTGAATGTGGTTGATGTTTCCTATGGTGGGGAAAATGGTTTTAATCAAGCTATTGAGTTATCCGCGGAGATGTTATCTAATGTGAACACGCTGAAGGCTCTGGAGATGGGTGCTGTGGGAACACTTATTGTGTGGGAAAATTTGGATATTAATAGATATGTACTGAAAAATAGTTCTACTGGTGAGATTGTCATAAAGCACTTGAACAAGGAGCAAGAGGGTAATCAGAGCAACTTCAGAGACTCGCCCACCTCAGCAGAGTTAGAGGTTCAGGAGAAGATGCCCTTGAGTGGATCACAATTTTGCAGAGGGTTTGGTGGTATTGGGGGTATCCTTTGCTACCAGCTCAATATCAGATCGTTTGATGAGTTATCTGATGATGGAGAAGTGTATGAGGATTCCGATTAA
Predicted protein sequences of Glyma19g28312
>Glyma19g28312.1   sequence type=predicted peptide   gene model=Glyma19g28312   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADGESDKNIEIWKIKKLIRALESARGNGTSMISLIMPPRDQISHVTKMLGDEFGTASNIKSRMARKKKVTIDFEPFKPINASLYLCDNKFHIEALNELLESDDKFGFIIMDGNDTLFGTLTGNTREVLHKFTVDLPKKHGRGGQSALCFACLRMEKRHNYVRNTAELATQFFINPATSQPNVSGLILAGSVGFKTELSQSDMFNPRLQAKILNVVDVSYGGENGFNQAIELSAEMLSNVNTLKALEMGAVGTLIVWENLDINRYVLKNSSTGEIVIKHLNKEQEGNQSNFRDSPTSAELEVQEKMPLSGSQFCRGFGGIGGILCYQLNIRSFDELSDDGEVYEDSD*






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