SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G02340 | AT | Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein | chr4:1035722-1037403 FORWARD LENGTH=324 | SoyBase | E_val: 6.00E-33 | ISS |
| GO:0005777 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: peroxisome | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: epoxide hydrolase activity | SoyBase | N/A | ISS |
| PTHR10992 | Panther | ALPHA/BETA HYDROLASE RELATED | JGI | ISS | |
| PTHR10992:SF279 | Panther | EPOXIDE HYDROLASE-RELATED | JGI | ISS | |
| UniRef100_B4UW64 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Epoxide hydrolase (Fragment) n=1 Tax=Arachis hypogaea RepID=B4UW64_ARAHY | SoyBase | E_val: 1.00E-106 | ISS |
| UniRef100_UPI000233E736 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E736 related cluster n=1 Tax=unknown RepID=UPI000233E736 | SoyBase | E_val: 1.00E-163 | ISS |
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Glyma19g28281 not represented in the dataset |
Glyma19g28281 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g107200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g28281.2 sequence type=transcript gene model=Glyma19g28281 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GACCATATCCCACCCCTCTCTCCTTGTTACCGGGATGCACACCAATCCATTCCTATCGTCGGTTACACTTCCTCCGGTGGCCACTTGTGAGAATGCGAAGGTTTGTCACACGACACCATCCCCACCACACAAAACCTGAGGAGCTCCACGCTTTCTTTGTTTTGTGTGTCTTGTGCTGCAGACAAAATTTGAGGAAAAGGGTCAAAAGGCACTGGTTTTCTTACATGGATTCCCAGAAATATGGTATACATGGAGGCATAAGATGATTGTTGCAGCAAATGCTGGCTATCGGACTATTGCCTTTGATTTCAGAGGCTATGGACTTTCTCAACATCATGCGAAGCCACAAAAAGCAAACTTACTTGACCTTGTTGATGATGTCGTGGGTCTGTTGGATTCATTAGGCATTACCAAGGACTTTGGTGCCTTTCCAGCATATATTGTTGTCGCTCTCCATCTAGAAAAAGTAGATTCAGTCATAATGTTAGGTTTTCCATTCATGCTTCCAGGTCCCTCTGTTATTCAGAACCTCCCAAAAGGCTCCTACGTTATTAAGTGGCAGGAGGCTGGGAGGGTAGAAGCAGATTTTGTTTGCTTTGATGTTAAGTCAGTTATAAGGAACATCTACACACTCTTCTCTGGAAGTGAGATACCAATAGCAGGTGATAATCAGGAAATCATGGATTTGTATGACCCAACTACTCCCCTACCACCATGGTTCTCTGAGGAAGACCTGGCAACCTATGAATCACTATACAAAAAATCTGGCTTCAGATTTGCATTGCAGGTTCTATACAGGTCTAGTTCCCCCAGCATGAAAGATATTGAAGCCTATTCTGCAATAAATACAGCAAAATTGGATGAAGCAGAACTTGCCAAATCTGTTCCTCACAATATATGTTTGGAGGTACCATTCCAAGTATGATCAATATTTATAAGCACCAATTATG
>Glyma19g28281.1 sequence type=CDS gene model=Glyma19g28281 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCAATACGAAATTTCCAATACTCCATATCATTTGCATACGTGGAAGTTAAGGGACTAAAGCTCCATGTTGTTGAGATTGGAAGTGGTCAAAAGGCACTGGTTTTCTTACATGGATTCCCAGAAATATGGTATACATGGAGGCATAAGATGATTGTTGCAGCAAATGCTGGCTATCGGACTATTGCCTTTGATTTCAGAGGCTATGGACTTTCTCAACATCATGCGAAGCCACAAAAAGCAAACTTACTTGACCTTGTTGATGATGTCGTGGGTCTGTTGGATTCATTAGGCATTACCAAGGACTTTGGTGCCTTTCCAGCATATATTGTTGTCGCTCTCCATCTAGAAAAAGTAGATTCAGTCATAATGTTAGGTTTTCCATTCATGCTTCCAGGTCCCTCTGTTATTCAGAACCTCCCAAAAGGCTCCTACGTTATTAAGTGGCAGGAGGCTGGGAGGGTAGAAGCAGATTTTGTTTGCTTTGATGTTAAGTCAGTTATAAGGAACATCTACACACTCTTCTCTGGAAGTGAGATACCAATAGCAGGTGATAATCAGGAAATCATGGATTTGTATGACCCAACTACTCCCCTACCACCATGGTTCTCTGAGGAAGACCTGGCAACCTATGAATCACTATACAAAAAATCTGGCTTCAGATTTGCATTGCAGGTTCTATACAGGTCTAGTTCCCCCAGCATGAAAGATATTGAAGCCTATTCTGCAATAAATACAGCAAAATTGGATGAAGCAGAACTTGCCAAATCTGTTCCTCACAATATATGTTTGGAGGTACCATTCCAAGTATGA >Glyma19g28281.2 sequence type=CDS gene model=Glyma19g28281 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATTGTTGCAGCAAATGCTGGCTATCGGACTATTGCCTTTGATTTCAGAGGCTATGGACTTTCTCAACATCATGCGAAGCCACAAAAAGCAAACTTACTTGACCTTGTTGATGATGTCGTGGGTCTGTTGGATTCATTAGGCATTACCAAGGACTTTGGTGCCTTTCCAGCATATATTGTTGTCGCTCTCCATCTAGAAAAAGTAGATTCAGTCATAATGTTAGGTTTTCCATTCATGCTTCCAGGTCCCTCTGTTATTCAGAACCTCCCAAAAGGCTCCTACGTTATTAAGTGGCAGGAGGCTGGGAGGGTAGAAGCAGATTTTGTTTGCTTTGATGTTAAGTCAGTTATAAGGAACATCTACACACTCTTCTCTGGAAGTGAGATACCAATAGCAGGTGATAATCAGGAAATCATGGATTTGTATGACCCAACTACTCCCCTACCACCATGGTTCTCTGAGGAAGACCTGGCAACCTATGAATCACTATACAAAAAATCTGGCTTCAGATTTGCATTGCAGGTTCTATACAGGTCTAGTTCCCCCAGCATGAAAGATATTGAAGCCTATTCTGCAATAAATACAGCAAAATTGGATGAAGCAGAACTTGCCAAATCTGTTCCTCACAATATATGTTTGGAGGTACCATTCCAAGTATGA
>Glyma19g28281.1 sequence type=predicted peptide gene model=Glyma19g28281 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPIRNFQYSISFAYVEVKGLKLHVVEIGSGQKALVFLHGFPEIWYTWRHKMIVAANAGYRTIAFDFRGYGLSQHHAKPQKANLLDLVDDVVGLLDSLGITKDFGAFPAYIVVALHLEKVDSVIMLGFPFMLPGPSVIQNLPKGSYVIKWQEAGRVEADFVCFDVKSVIRNIYTLFSGSEIPIAGDNQEIMDLYDPTTPLPPWFSEEDLATYESLYKKSGFRFALQVLYRSSSPSMKDIEAYSAINTAKLDEAELAKSVPHNICLEVPFQV* >Glyma19g28281.2 sequence type=predicted peptide gene model=Glyma19g28281 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIVAANAGYRTIAFDFRGYGLSQHHAKPQKANLLDLVDDVVGLLDSLGITKDFGAFPAYIVVALHLEKVDSVIMLGFPFMLPGPSVIQNLPKGSYVIKWQEAGRVEADFVCFDVKSVIRNIYTLFSGSEIPIAGDNQEIMDLYDPTTPLPPWFSEEDLATYESLYKKSGFRFALQVLYRSSSPSMKDIEAYSAINTAKLDEAELAKSVPHNICLEVPFQV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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