Glyma19g28200 - SoyBase

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Report for Sequence Feature Glyma19g28200

Feature Type:	gene_model
Chromosome:	Gm19
Start:	35580370
stop:	35582142
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g28200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G13870	AT	Annotation by Michelle Graham. TAIR10: xyloglucan endotransglucosylase/hydrolase 5 \| chr5:4475089-4476217 REVERSE LENGTH=293	SoyBase	E_val: 7.00E-132	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0006073	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular glucan metabolic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
GO:0004553	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds	SoyBase	N/A	ISS
GO:0016762	GO-mf	Annotation by Michelle Graham. GO Molecular Function: xyloglucan:xyloglucosyl transferase activity	SoyBase	N/A	ISS
GO:0016798	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on glycosyl bonds	SoyBase	N/A	ISS
PF00722	PFAM	Glycosyl hydrolases family 16	JGI		ISS
PF06955	PFAM	Xyloglucan endo-transglycosylase (XET) C-terminus	JGI		ISS
UniRef100_I1N841	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N841_SOYBN	SoyBase	E_val: 9.00E-160	ISS
UniRef100_Q5MB21	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Xyloglucan endotransglucosylase/hydrolase n=1 Tax=Vigna radiata RepID=Q5MB21_VIGRA	SoyBase	E_val: 2.33E-156	ISS

Expression Patterns of Glyma19g28200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g28200

Paralog	Evidence	Comments
Glyma16g04960	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g28200 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g106600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g28200

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g28200

Limit To All Plant Sequences

>Glyma19g28200.2   sequence type=CDS   gene model=Glyma19g28200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACATAAAGATGGTTCCTGGCGATTCAGCTGGCACGGTCACTGCTTTTTATTTATCTTCTCAAAATGCGGAGCATGATGAGATAGATTTTGAGTTCTTGGGGAACAGAACAGGACAACCTTACATATTGCAAACAAATGTTTTCACCGGAGGCAAGGGTGACAGAGAGCAAAGAATCTTTCTCTGGTTTGATCCCACAAAAGCATACCACAGATACTCTGTACTATGGAACATGTATCAAATTGTGTTCCTAGTGGATAACATCCCAATGAGGGTGTTCAAGAACCTAAACGGCTTGGGAGTGAAGTTCCCCTTTGATCAACCCATGAAGGTATACAACAGCTTGTGGAATGCTGATGACTGGGCCACAAGGGGTGGATTGGAGAAAACAGATTGGTCCAAAGCACCATTCATCGCAGAATACATAGGGTTCCACATTGATGGGTGTGAAGCCTCAGTGAATGCCAAGTTCTGTGCCACACAGGGCAAGAGGTGGTGGGATCAAGCACAGTATCGTGACCTTGATGCTTCTCAATGGCGTTGGCTCAGGTGGGTGCGCAGGAAATACACCATCTACAACTACTGCACTGACAGAAGCCGCTACCCTCAGCTTCCACTTGAATGCAGAAGAAACCGTGACATTTAA

Predicted protein sequences of Glyma19g28200

Limit To All Plant Sequences

>Glyma19g28200.2   sequence type=predicted peptide   gene model=Glyma19g28200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNIKMVPGDSAGTVTAFYLSSQNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIFLWFDPTKAYHRYSVLWNMYQIVFLVDNIPMRVFKNLNGLGVKFPFDQPMKVYNSLWNADDWATRGGLEKTDWSKAPFIAEYIGFHIDGCEASVNAKFCATQGKRWWDQAQYRDLDASQWRWLRWVRRKYTIYNYCTDRSRYPQLPLECRRNRDI*

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