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Report for Sequence Feature Glyma19g28190

Feature Type:gene_model
Chromosome:Gm19
Start:35562169
stop:35563633
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g28190
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G47920AT Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:19403458-19404021 REVERSE LENGTH=187 SoyBaseE_val: 1.00E-39ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005575GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cellular component SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1N840UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N840_SOYBN SoyBaseE_val: 4.00E-151ISS
UniRef100_Q9FII9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Emb|CAB67623.1 n=1 Tax=Arabidopsis thaliana RepID=Q9FII9_ARATH SoyBaseE_val: 5.00E-37ISS

Expression Patterns of Glyma19g28190
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g28190
ParalogEvidenceComments
Glyma16g04970 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g28190 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g106500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g28190
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g28190
>Glyma19g28190.1   sequence type=CDS   gene model=Glyma19g28190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAACAGAACATCAGGGTTTCTGAAGGAGATCATAGCAAATCTGAGCTCAATGGCCAAGTCAAAAACCATGGCCTTGAAGTCCAAAACAAACGCCATAAGGGCACGTTTGATCATATTCTCACTTATGAAGAACAAGAAATTCTTGATGAGTTCCCTCTCTGAGAAGTTCCATTCTGTGTGGGGGCAAAGTTCATCTCAACAAAAGGAAGATCATTGCTTATTGGAAGATGGCAGCAATGATCACCAAAGCAAGGCCATAGTGTTGTACAACAGCAATGCACACTCCTATGAGGCCCTGCCTAACCCCAGTGAAACCCAATTGGTGGTGGAGGAGGAACAAGACCAAGATGGATATGATGGTTACTACAATTATCATTGTGATGATGATGAGAAGTACCCTGATCTCACACACACCCTTTTTGAGTCTGAGGATTTGGATCTTGGAGGGTCAGTGATTGATTTGATGAAGAATTCTAAGGAGGAGGCAGGGAAAGAGTTTAAGCTGGAGGATGAGATTGACCTTGCTGCTGATCTTTTCATCATGAAGTTTCGAAGGCAAATGGTGCTGCAGAAGCAAGAATCATTGAAGAGGAAGAGGGAAGTGCTGGAAAATGGTGCATGA
Predicted protein sequences of Glyma19g28190
>Glyma19g28190.1   sequence type=predicted peptide   gene model=Glyma19g28190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKNRTSGFLKEIIANLSSMAKSKTMALKSKTNAIRARLIIFSLMKNKKFLMSSLSEKFHSVWGQSSSQQKEDHCLLEDGSNDHQSKAIVLYNSNAHSYEALPNPSETQLVVEEEQDQDGYDGYYNYHCDDDEKYPDLTHTLFESEDLDLGGSVIDLMKNSKEEAGKEFKLEDEIDLAADLFIMKFRRQMVLQKQESLKRKREVLENGA*






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