Glyma19g28010 - SoyBase

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Report for Sequence Feature Glyma19g28010

Feature Type:	gene_model
Chromosome:	Gm19
Start:	35379627
stop:	35383018
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g28010

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G13920	AT	Annotation by Michelle Graham. TAIR10: GRF zinc finger / Zinc knuckle protein \| chr5:4485931-4487433 REVERSE LENGTH=415	SoyBase	E_val: 2.00E-24	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PF06839	PFAM	GRF zinc finger	JGI		ISS
UniRef100_D7M5X9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc knuckle (CCHC-type) family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7M5X9_ARALL	SoyBase	E_val: 5.00E-22	ISS
UniRef100_I1N832	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N832_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g28010

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g28010 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g105500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g28010

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g28010

Limit To All Plant Sequences

>Glyma19g28010.2   sequence type=transcript   gene model=Glyma19g28010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAGGACCTTACTTTACCTTAGGGTACTAACCTCTCTTAAGTGAGTGAGTAAGACTTTAATTCTAACAAGCTTCTCTTACAAGTTTTTGAAATAGCTTCTTCGGCCCTGTCAACCTTCTCCTCGATCATGTCTATATATACACCTTGCCGCAGCTCAAGGAAACGACATCTCAGGCTTCGGTCCACACAAGTCTCTCATCTCATTCCCTCGTTCTTTGCATCTTGCTCTTGTTGATCATTGTTTGGGTTCCAACCCATATCACTTCCCACACTGCCGTCATCAATTACGCATGGATCATGAGATAAAAGAGCCACCACCTCTCTCATCCACACTCTGTTCTCAACCCTCTCAATTCAGTCAAAACACTCAAGAAACTTATCCCCGTTACTTCCAACAAGACTTGAACGAAAGAAAGAAAAAAGGCACGTGCATCACGTGCGGCCAGAAGGATCACTGGTACCGGGAGTGTCCCTTCAAATCCTCTAATAACGATTCCCAAAATGCCAACAGCATATGGTGCCGCTGTGGCCATGGCCGTTGCGAAAAGAGAACCTCAAAGAGTGAGAAAAACCCCGGCAGGATGTACTACGTTTGCCCCATCAAAAGGGGGGAAAAATGTACTAACGGTTTTGTTAAATGGTGCGATGATCCCGATGTCGAGAGTGATTGGTCGCAGCCTCCGCCGTTTAAGTATCCTGAGTGTAAGTGTCCTGCTGGAGTGTGTAAAAGGGAGAAGGCAACACATAATGGCGTTGTTAAATACTATTTTACTTGCCCCGTTAAAGAGGGCCATGGAAATTGCGGTTACAAGGTATGGGAGGATGAGCTGCTACATATAAGAACTAATGATCAAGATGACCATGACTTCGATGAGGGTGTTAATTTGGCAGTAAATCATTCCAAAAAGATGAGAATCATGGACAGTTCCGAGGAGGATCCAACACCAATGGCTGTATCCGAGGCTGAGCTTTCACAGAGTGAAGATGAAGCACTCGAGAAAGCATCGCAGCTATCTTGCCTATCAGAATCAACACCTTCAAGGATCGGTGGGGATCGACAGCATGTGTTTCCAAGGCACATTTTTGCTGGTGCTGGTGCTGGCGCTGGCGCTGATCCATCATTTGGTGTTTTCCCATCCTTTAATCCCATAGATGTCCCAAAACAACCAAGTATTACTAATGTTCCTTGTGCTGAACATAACCAGCTTGATGTTATTCGTCTCAGCCAACAAAGCCAACTTTCAAGCAGTGAAAGAAAACTAATGTCAAGGGCACAAAGGCAAAGACAATTGGCCTTTGCTGCACAAAAGCAGCTCCTCAATGATCTAGAAACCTCGAAGCCTCACGAGCATGAGTCCATGAAAGAGGCAGCACAAGACACTTTTGCTATATTAGACAACTTGGGTGCAAATGACACACAATTCTTTGAGCATGTTTTGTATTTCATAAAACTCACATCATCGGTTGTACAAATGACTAAATCCATCGAATGTCTTGAGGAGGACAACAAGCGTCTTGAGGACGAGAATGCCAAACTCGCCCACATTCGTGACCTCTACGCCAAGACCGAAGATCAGTTCCAAGCCTCTGATCAACGAAGGCAATTACTTTCCAAAGAGATCTCTGACTTTGAGGCCATGCTTGTTGAGAAACGAAACCAATTGAAGTCGTGTGAATTGGAAACTTCAAACATGCGAATCGAACTTGGTGGTTTGAGAAGAACTATGTTGGAAGCTGATACAGCCTTGAAGGCTAGAATGAAGCAAGCAGAGATTGCAGGTAAACTTAGGAAAGAGAGAGAAGCCAAACAAATTGCAGCCAAAACAGCACTCGAGAAGGCCAGGCTTAAATCAGAGTATTAATTAATTATCCAATAGTATTTGTGAGTTCTGTGAACTAGAGTTGTAAATATTAGTGTTTAATTTAACTTGCTCTTTATTTTCTCTATCAGTGCAAGTTAAGATTAATCTCACGTT

Coding sequences of Glyma19g28010

Limit To All Plant Sequences

>Glyma19g28010.1   sequence type=CDS   gene model=Glyma19g28010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCATGAGATAAAAGAGCCACCACCTCTCTCATCCACACTCTGTTCTCAACCCTCTCAATTCAGTCAAAACACTCAAGAAACTTATCCCCGTTACTTCCAACAAGACTTGAACGAAAGAAAGAAAAAAGGCACGTGCATCACGTGCGGCCAGAAGGATCACTGGTACCGGGAGTGTCCCTTCAAATCCTCTAATAACGATTCCCAAAATGCCAACAGCATATGGTGCCGCTGTGGCCATGGCCGTTGCGAAAAGAGAACCTCAAAGAGTGAGAAAAACCCCGGCAGGATGTACTACGTTTGCCCCATCAAAAGGGGGGAAAAATGTACTAACGGTTTTGTTAAATGGTGCGATGATCCCGATGTCGAGAGTGATTGGTCGCAGCCTCCGCCGTTTAAGTATCCTGAGTGTAAGTGTCCTGCTGGAGTGTGTAAAAGGGAGAAGGCAACACATAATGGCGTTGTTAAATACTATTTTACTTGCCCCGTTAAAGAGGGCCATGGAAATTGCGGTTACAAGGTATGGGAGGATGAGCTGCTACATATAAGAACTAATGATCAAGATGACCATGACTTCGATGAGGGTGTTAATTTGGCAGTAAATCATTCCAAAAAGATGAGAATCATGGACAGTTCCGAGGAGGATCCAACACCAATGGCTGTATCCGAGGCTGAGCTTTCACAGAGTGAAGATGAAGCACTCGAGAAAGCATCGCAGCTATCTTGCCTATCAGAATCAACACCTTCAAGGATCGGTGGGGATCGACAGCATGTGTTTCCAAGGCACATTTTTGCTGGTGCTGGTGCTGGCGCTGGCGCTGATCCATCATTTGGTCGGTTAGGTCGCCTTCTCTTCAGTCCACCACAAAGCTTGAAATCCCCCTCATCTCAGACACCTCAGTCAATTTTCTGCTGTGTTTTCCCATCCTTTAATCCCATAGATGTCCCAAAACAACCAAGTATTACTAATGTTCCTTGTGCTGAACATAACCAGCTTGATGTTATTCGTCTCAGCCAACAAAGCCAACTTTCAAGCAGTGAAAGAAAACTAATGTCAAGGGCACAAAGGCAAAGACAATTGGCCTTTGCTGCACAAAAGCAGCTCCTCAATGATCTAGAAACCTCGAAGCCTCACGAGCATGAGTCCATGAAAGAGGCAGCACAAGACACTTTTGCTATATTAGACAACTTGGGTGCAAATGACACACAATTCTTTGAGCATGTTTTGTATTTCATAAAACTCACATCATCGGTTGTACAAATGACTAAATCCATCGAATGTCTTGAGGAGGACAACAAGCGTCTTGAGGACGAGAATGCCAAACTCGCCCACATTCGTGACCTCTACGCCAAGACCGAAGATCAGTTCCAAGCCTCTGATCAACGAAGGCAATTACTTTCCAAAGAGATCTCTGACTTTGAGGCCATGCTTGTTGAGAAACGAAACCAATTGAAGTCGTGTGAATTGGAAACTTCAAACATGCGAATCGAACTTGGTGGTTTGAGAAGAACTATGTTGGAAGCTGATACAGCCTTGAAGGCTAGAATGAAGCAAGCAGAGATTGCAGGTAAACTTAGGAAAGAGAGAGAAGCCAAACAAATTGCAGCCAAAACAGCACTCGAGAAGGCCAGGCTTAAATCAGAGTATTAA

>Glyma19g28010.2   sequence type=CDS   gene model=Glyma19g28010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCATGAGATAAAAGAGCCACCACCTCTCTCATCCACACTCTGTTCTCAACCCTCTCAATTCAGTCAAAACACTCAAGAAACTTATCCCCGTTACTTCCAACAAGACTTGAACGAAAGAAAGAAAAAAGGCACGTGCATCACGTGCGGCCAGAAGGATCACTGGTACCGGGAGTGTCCCTTCAAATCCTCTAATAACGATTCCCAAAATGCCAACAGCATATGGTGCCGCTGTGGCCATGGCCGTTGCGAAAAGAGAACCTCAAAGAGTGAGAAAAACCCCGGCAGGATGTACTACGTTTGCCCCATCAAAAGGGGGGAAAAATGTACTAACGGTTTTGTTAAATGGTGCGATGATCCCGATGTCGAGAGTGATTGGTCGCAGCCTCCGCCGTTTAAGTATCCTGAGTGTAAGTGTCCTGCTGGAGTGTGTAAAAGGGAGAAGGCAACACATAATGGCGTTGTTAAATACTATTTTACTTGCCCCGTTAAAGAGGGCCATGGAAATTGCGGTTACAAGGTATGGGAGGATGAGCTGCTACATATAAGAACTAATGATCAAGATGACCATGACTTCGATGAGGGTGTTAATTTGGCAGTAAATCATTCCAAAAAGATGAGAATCATGGACAGTTCCGAGGAGGATCCAACACCAATGGCTGTATCCGAGGCTGAGCTTTCACAGAGTGAAGATGAAGCACTCGAGAAAGCATCGCAGCTATCTTGCCTATCAGAATCAACACCTTCAAGGATCGGTGGGGATCGACAGCATGTGTTTCCAAGGCACATTTTTGCTGGTGCTGGTGCTGGCGCTGGCGCTGATCCATCATTTGGTGTTTTCCCATCCTTTAATCCCATAGATGTCCCAAAACAACCAAGTATTACTAATGTTCCTTGTGCTGAACATAACCAGCTTGATGTTATTCGTCTCAGCCAACAAAGCCAACTTTCAAGCAGTGAAAGAAAACTAATGTCAAGGGCACAAAGGCAAAGACAATTGGCCTTTGCTGCACAAAAGCAGCTCCTCAATGATCTAGAAACCTCGAAGCCTCACGAGCATGAGTCCATGAAAGAGGCAGCACAAGACACTTTTGCTATATTAGACAACTTGGGTGCAAATGACACACAATTCTTTGAGCATGTTTTGTATTTCATAAAACTCACATCATCGGTTGTACAAATGACTAAATCCATCGAATGTCTTGAGGAGGACAACAAGCGTCTTGAGGACGAGAATGCCAAACTCGCCCACATTCGTGACCTCTACGCCAAGACCGAAGATCAGTTCCAAGCCTCTGATCAACGAAGGCAATTACTTTCCAAAGAGATCTCTGACTTTGAGGCCATGCTTGTTGAGAAACGAAACCAATTGAAGTCGTGTGAATTGGAAACTTCAAACATGCGAATCGAACTTGGTGGTTTGAGAAGAACTATGTTGGAAGCTGATACAGCCTTGAAGGCTAGAATGAAGCAAGCAGAGATTGCAGGTAAACTTAGGAAAGAGAGAGAAGCCAAACAAATTGCAGCCAAAACAGCACTCGAGAAGGCCAGGCTTAAATCAGAGTATTAA

Predicted protein sequences of Glyma19g28010

Limit To All Plant Sequences

>Glyma19g28010.1   sequence type=predicted peptide   gene model=Glyma19g28010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDHEIKEPPPLSSTLCSQPSQFSQNTQETYPRYFQQDLNERKKKGTCITCGQKDHWYRECPFKSSNNDSQNANSIWCRCGHGRCEKRTSKSEKNPGRMYYVCPIKRGEKCTNGFVKWCDDPDVESDWSQPPPFKYPECKCPAGVCKREKATHNGVVKYYFTCPVKEGHGNCGYKVWEDELLHIRTNDQDDHDFDEGVNLAVNHSKKMRIMDSSEEDPTPMAVSEAELSQSEDEALEKASQLSCLSESTPSRIGGDRQHVFPRHIFAGAGAGAGADPSFGRLGRLLFSPPQSLKSPSSQTPQSIFCCVFPSFNPIDVPKQPSITNVPCAEHNQLDVIRLSQQSQLSSSERKLMSRAQRQRQLAFAAQKQLLNDLETSKPHEHESMKEAAQDTFAILDNLGANDTQFFEHVLYFIKLTSSVVQMTKSIECLEEDNKRLEDENAKLAHIRDLYAKTEDQFQASDQRRQLLSKEISDFEAMLVEKRNQLKSCELETSNMRIELGGLRRTMLEADTALKARMKQAEIAGKLRKEREAKQIAAKTALEKARLKSEY*

>Glyma19g28010.2   sequence type=predicted peptide   gene model=Glyma19g28010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDHEIKEPPPLSSTLCSQPSQFSQNTQETYPRYFQQDLNERKKKGTCITCGQKDHWYRECPFKSSNNDSQNANSIWCRCGHGRCEKRTSKSEKNPGRMYYVCPIKRGEKCTNGFVKWCDDPDVESDWSQPPPFKYPECKCPAGVCKREKATHNGVVKYYFTCPVKEGHGNCGYKVWEDELLHIRTNDQDDHDFDEGVNLAVNHSKKMRIMDSSEEDPTPMAVSEAELSQSEDEALEKASQLSCLSESTPSRIGGDRQHVFPRHIFAGAGAGAGADPSFGVFPSFNPIDVPKQPSITNVPCAEHNQLDVIRLSQQSQLSSSERKLMSRAQRQRQLAFAAQKQLLNDLETSKPHEHESMKEAAQDTFAILDNLGANDTQFFEHVLYFIKLTSSVVQMTKSIECLEEDNKRLEDENAKLAHIRDLYAKTEDQFQASDQRRQLLSKEISDFEAMLVEKRNQLKSCELETSNMRIELGGLRRTMLEADTALKARMKQAEIAGKLRKEREAKQIAAKTALEKARLKSEY*

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