Glyma19g27860 - SoyBase

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Report for Sequence Feature Glyma19g27860

Feature Type:	gene_model
Chromosome:	Gm19
Start:	35204659
stop:	35206868
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g27860

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G19330	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF677) \| chr3:6699423-6700772 FORWARD LENGTH=382	SoyBase	E_val: 1.00E-72	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF05055	PFAM	Protein of unknown function (DUF677)	JGI		ISS
UniRef100_I1N825	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N825_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q7X7I1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: OJ000315_02.21 protein n=2 Tax=Oryza sativa RepID=Q7X7I1_ORYSJ	SoyBase	E_val: 9.00E-38	ISS

Expression Patterns of Glyma19g27860

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g27860

Paralog	Evidence	Comments
Glyma16g05160	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g27860 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g104500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g27860

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g27860

Limit To All Plant Sequences

>Glyma19g27860.2   sequence type=CDS   gene model=Glyma19g27860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGGAATGCGTTTCTTTCAAATCGTCGACTCCTACCACCAACTCTTCTCCACTTCCTCCCCCTTCCCACTCTCATTCCGAAGGGAACTCGGCGGAGGAATTCGAAGAAGACACTTCTGCCACAAGCCCAAACGTCTCGGGCGAGTTCCACCGCGCTTTGGAGGCCCACTCCTACAACGAGATCCGGTCCATGGTCCAGGCCCCACCGCAGGTCCACCACATCGACGACGAGGACTCGCACCACCGCCACGTCCTCTCCCAGGTCCTCCAACCCGACTCTCACAGCGTCCACGAAGCCCTCGCGAAAGCAAAACCTAAGAGCAACCTCACGCGCCTCGTCTCCACCTACTTCTACCACAGCGAAACCGCCTCCGACTTCTGCCTCCGCCTCAGCCGCAGCGTCCACCGCGCCCGCCACCTCTACGCGCCGCTCTCTGACCTCCTCGCCGTCCTCCCCGCCTCCGCACCGCCGCTCTCCCAACCGCAATGCGACCGCGCCTACGAGCTCTTCCTCCAATTTGACCGCGAAGAGAATCCTTTCGCGCTCTCCCGCCTCCACCGCCTCCGCGACGACTTCTCCGACCTCAAGCGCGACATCCAGCGCGACCTCCGTAAGTGCCACTCGCGAATCCGCCTCTTCCGCCACAGCGCCGCGGGCTGCGCCCTCTGCTTCGTTGCCGTCGCTGCCGGCACCGTTGTCGTTGCCTCCATCGTCTTCGTACATGCTGTAGTAGGGTTCAGCGCCCTCTCCGCGGCGCCGTTTTGTGTTACGCGGCAGAAGAGGAGGGAGCTTGCGAGGCTGAAGCAGCTTGAGGCTGTGGAGAATGGGACTCTTGTGGTGAATGACATTAACACCATTGATAGCCTCGTTGATCGGCTTCAAACCGCAGTAGAAGGGGATAAGGCTTTTGTTAGGTTTGCATTGGATAGGGGAAGGGAGAGACATCCCATTCAGGAAGTGCTTAACCAGCTTAGAAAGAACCAACCTGTTTTGGAGCATTTGCTTGGGGATCTTGAGCAACATATATACTTCTGCTTTTATAGTGTTAACATGGCCAGATATGCACTCCTCAAAGCGATATGCAGTCATCAAACTCCCTAG

Predicted protein sequences of Glyma19g27860

Limit To All Plant Sequences

>Glyma19g27860.2   sequence type=predicted peptide   gene model=Glyma19g27860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLECVSFKSSTPTTNSSPLPPPSHSHSEGNSAEEFEEDTSATSPNVSGEFHRALEAHSYNEIRSMVQAPPQVHHIDDEDSHHRHVLSQVLQPDSHSVHEALAKAKPKSNLTRLVSTYFYHSETASDFCLRLSRSVHRARHLYAPLSDLLAVLPASAPPLSQPQCDRAYELFLQFDREENPFALSRLHRLRDDFSDLKRDIQRDLRKCHSRIRLFRHSAAGCALCFVAVAAGTVVVASIVFVHAVVGFSALSAAPFCVTRQKRRELARLKQLEAVENGTLVVNDINTIDSLVDRLQTAVEGDKAFVRFALDRGRERHPIQEVLNQLRKNQPVLEHLLGDLEQHIYFCFYSVNMARYALLKAICSHQTP*

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