Glyma19g27800 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma19g27800

Feature Type:	gene_model
Chromosome:	Gm19
Start:	35160362
stop:	35180749
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g27800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G19340	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF3754) \| chr3:6701387-6704071 REVERSE LENGTH=487	SoyBase	E_val: 0	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
PF12576	PFAM	Protein of unknown function (DUF3754)	JGI		ISS
UniRef100_Q2QQX3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q2QQX3_ORYSJ	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E02A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E02A related cluster n=1 Tax=unknown RepID=UPI000233E02A	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g27800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g27800

Paralog	Evidence	Comments
Glyma16g05180	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g27800 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g104300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g27800

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g27800

Limit To All Plant Sequences

>Glyma19g27800.2   sequence type=CDS   gene model=Glyma19g27800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACATTTGCATGAAGTGGATCGAAGCAAGAATGAAGTTATACGTTTAGAGCGGGAATCCGTGATTCCAATTCTGAAGCCTAAGCTCACAATGACACTGGCCAATCTTATTGAACATAGTTCTGACCGAGCTGAGTTCTTGAAGCTCTGCAAGAGAATAGAGTACACAATTCGAGCTTGGTACCTTCTACAGTTTGAGGACTTGATGCAACTATACTCCCTCTTTGACCCTGTACATGGGGCGCAAAAGTTGGAACAGCAGAAGTTATCTTCCGAAGAAATTGATGTGCTTGAACAGAATTTCTTGACATACCTATTTCAGGTCATGGAAAAGAGCAACTTCAAGATAGTGACTGATGATGAGATTGATGTTGCACATTCAGGCCAATATCTTCTAAATCTTCCCATTACTGTTGATGAATCTAAGCTTGACAAGACACTTCTGAAGAAATATTTTGAAGAGCATCATCATGATGACCTACCAGATTTTTCTGATAAGTATGTTATCTTTCGACGTGGCATTGGAATTGATCGAACAACTGACTACTTTGTGATGGAGAAAGTGGACATGCTTATTGGACGCTTTTGGGCATATCTATTGAGAGTAACTAGGTTGGAAAAGCTTCTATCCAGAAGGTCAAAAAGGCACAATAAGAAAGATCCAAAGAAGGACAATGAAATTAACTCTGAAGCAGATGGGCAGGACCTTTATGTTGAACGGATACGTCTTGAAAATATGCAACTAAGTTTCCATAATTTGCTGGGCAAGACCTTAATCCAAGAACCAACATTTGATAGGATAATTGTTGTCTACAGGAGAGCCAGAACCAAATCAAAAGAAGAACGAGGAATATATGTGAAGCATTTCAAAAACATTCCAATGGCTGATATGGAAATAGTTCTTCCAGAAAAGAAAAACCCTGGATTAACTCCAATGGATTGGGTCAAGTTTCTTGGATCAGCTATAGTTGGTTTGGTTGCTGTTGTTAGTTCACTTGAAATGCCTTCAGCTGATTGGTGGGTCATCATTGCTGTTCTCTCCACAGTAATTGGTTATATCGCTAAGACATACTTCACGTTCCAACAAAACATGGCTCAGTACCAAAATTTGATTACACAGTCAATGTATGACAAACAACTTGACAGTGGAAAGGGTACACTTCTTCATTTGTGTGATGATGTCATTCAACAGGAAGTCAAAGAGGTTATAGTTTCATTCTTTATTCTGATGGAACAGGGCAAAGCTACAAGACAGGATCTTGATCAATGGTGTGAGGAACTAATCAAAGAAGAGTTTGATGAGGAATGTAATTTTGATGTGGATGATGCTGTTGAGAAATTAGAGAAATTGGGAATTGTTACTCGAGATTCTGTTGGTCGATATCAATGTGTCGGGCTAAAACGGGCTAACGATATCATTGGCACCACCACTGAAGAGCTTGTCCTTAAGGCAAAACAGGGAAGCATGACTTCTTGA

Predicted protein sequences of Glyma19g27800

Limit To All Plant Sequences

>Glyma19g27800.2   sequence type=predicted peptide   gene model=Glyma19g27800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAHLHEVDRSKNEVIRLERESVIPILKPKLTMTLANLIEHSSDRAEFLKLCKRIEYTIRAWYLLQFEDLMQLYSLFDPVHGAQKLEQQKLSSEEIDVLEQNFLTYLFQVMEKSNFKIVTDDEIDVAHSGQYLLNLPITVDESKLDKTLLKKYFEEHHHDDLPDFSDKYVIFRRGIGIDRTTDYFVMEKVDMLIGRFWAYLLRVTRLEKLLSRRSKRHNKKDPKKDNEINSEADGQDLYVERIRLENMQLSFHNLLGKTLIQEPTFDRIIVVYRRARTKSKEERGIYVKHFKNIPMADMEIVLPEKKNPGLTPMDWVKFLGSAIVGLVAVVSSLEMPSADWWVIIAVLSTVIGYIAKTYFTFQQNMAQYQNLITQSMYDKQLDSGKGTLLHLCDDVIQQEVKEVIVSFFILMEQGKATRQDLDQWCEELIKEEFDEECNFDVDDAVEKLEKLGIVTRDSVGRYQCVGLKRANDIIGTTTEELVLKAKQGSMTS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain