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Report for Sequence Feature Glyma19g27650

Feature Type:gene_model
Chromosome:Gm19
Start:34943693
stop:34946873
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g27650
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G26720AT Annotation by Michelle Graham. TAIR10: Glycosyl hydrolase family 38 protein | chr3:9816707-9822958 FORWARD LENGTH=943 SoyBaseE_val: 9.00E-16ISS
GO:0005975GO-bp Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process SoyBaseN/AISS
GO:0006013GO-bp Annotation by Michelle Graham. GO Biological Process: mannose metabolic process SoyBaseN/AISS
GO:0007155GO-bp Annotation by Michelle Graham. GO Biological Process: cell adhesion SoyBaseN/AISS
GO:0010048GO-bp Annotation by Michelle Graham. GO Biological Process: vernalization response SoyBaseN/AISS
GO:0010090GO-bp Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis SoyBaseN/AISS
GO:0045010GO-bp Annotation by Michelle Graham. GO Biological Process: actin nucleation SoyBaseN/AISS
GO:0048765GO-bp Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation SoyBaseN/AISS
GO:0071555GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall organization SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0009505GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0004553GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds SoyBaseN/AISS
GO:0004559GO-mf Annotation by Michelle Graham. GO Molecular Function: alpha-mannosidase activity SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
GO:0015923GO-mf Annotation by Michelle Graham. GO Molecular Function: mannosidase activity SoyBaseN/AISS
GO:0030246GO-mf Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding SoyBaseN/AISS
PTHR11607Panther ALPHA-MANNOSIDASE JGI ISS
PTHR11607:SF3Panther LYSOSOMAL ALPHA-MANNOSIDASE (MANNOSIDASE ALPHA CLASS 2B MEMBER 1) JGI ISS
PF09261PFAM Alpha mannosidase, middle domain JGI ISS
UniRef100_G7KX95UniRef Annotation by Michelle Graham. Most informative UniRef hit: Lysosomal alpha-mannosidase n=1 Tax=Medicago truncatula RepID=G7KX95_MEDTR SoyBaseE_val: 9.00E-22ISS
UniRef100_UPI000233F1BAUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233F1BA related cluster n=1 Tax=unknown RepID=UPI000233F1BA SoyBaseE_val: 5.00E-27ISS

Expression Patterns of Glyma19g27650
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g27650 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma19g27650
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g27650
>Glyma19g27650.1   sequence type=CDS   gene model=Glyma19g27650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCTTTAGCAATTGCGCAACACCATGATGCAGTCACTGGCACAGAAAAGCAGCATGTGGCTAATGATTATTCTAAACAATTGTCAATAGGCTACAAGAAGGCGGAGGATTTGGTTTCATCATCGCTGGCTTGGTTGATTGAGTCACCGTTGCTTACTACATGTCAAAACACAGTTACAAAGTTTTTAAAAGAGCTCAAATCCTTTTAA
Predicted protein sequences of Glyma19g27650
>Glyma19g27650.1   sequence type=predicted peptide   gene model=Glyma19g27650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ALAIAQHHDAVTGTEKQHVANDYSKQLSIGYKKAEDLVSSSLAWLIESPLLTTCQNTVTKFLKELKSF*






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