|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT3G26720 | AT | Annotation by Michelle Graham. TAIR10: Glycosyl hydrolase family 38 protein | chr3:9816707-9822958 FORWARD LENGTH=943 | SoyBase | E_val: 9.00E-16 | ISS |
GO:0005975 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process | SoyBase | N/A | ISS |
GO:0006013 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mannose metabolic process | SoyBase | N/A | ISS |
GO:0007155 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell adhesion | SoyBase | N/A | ISS |
GO:0010048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vernalization response | SoyBase | N/A | ISS |
GO:0010090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis | SoyBase | N/A | ISS |
GO:0045010 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin nucleation | SoyBase | N/A | ISS |
GO:0048765 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation | SoyBase | N/A | ISS |
GO:0071555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall organization | SoyBase | N/A | ISS |
GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
GO:0009505 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall | SoyBase | N/A | ISS |
GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
GO:0004553 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds | SoyBase | N/A | ISS |
GO:0004559 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: alpha-mannosidase activity | SoyBase | N/A | ISS |
GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
GO:0015923 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: mannosidase activity | SoyBase | N/A | ISS |
GO:0030246 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding | SoyBase | N/A | ISS |
PTHR11607 | Panther | ALPHA-MANNOSIDASE | JGI | ISS | |
PTHR11607:SF3 | Panther | LYSOSOMAL ALPHA-MANNOSIDASE (MANNOSIDASE ALPHA CLASS 2B MEMBER 1) | JGI | ISS | |
PF09261 | PFAM | Alpha mannosidase, middle domain | JGI | ISS | |
UniRef100_G7KX95 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Lysosomal alpha-mannosidase n=1 Tax=Medicago truncatula RepID=G7KX95_MEDTR | SoyBase | E_val: 9.00E-22 | ISS |
UniRef100_UPI000233F1BA | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233F1BA related cluster n=1 Tax=unknown RepID=UPI000233F1BA | SoyBase | E_val: 5.00E-27 | ISS |
Glyma19g27650 not represented in the dataset |
Glyma19g27650 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g27650.1 sequence type=CDS gene model=Glyma19g27650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCTTTAGCAATTGCGCAACACCATGATGCAGTCACTGGCACAGAAAAGCAGCATGTGGCTAATGATTATTCTAAACAATTGTCAATAGGCTACAAGAAGGCGGAGGATTTGGTTTCATCATCGCTGGCTTGGTTGATTGAGTCACCGTTGCTTACTACATGTCAAAACACAGTTACAAAGTTTTTAAAAGAGCTCAAATCCTTTTAA
>Glyma19g27650.1 sequence type=predicted peptide gene model=Glyma19g27650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ALAIAQHHDAVTGTEKQHVANDYSKQLSIGYKKAEDLVSSSLAWLIESPLLTTCQNTVTKFLKELKSF*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||