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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G26730 | AT | Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr3:9823770-9827270 FORWARD LENGTH=772 | SoyBase | E_val: 0 | ISS |
| GO:0007062 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion | SoyBase | N/A | ISS |
| GO:0007131 | GO-bp | Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0033044 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization | SoyBase | N/A | ISS |
| GO:0042138 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic DNA double-strand break formation | SoyBase | N/A | ISS |
| GO:0045132 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG2164 | KOG | Predicted E3 ubiquitin ligase | JGI | ISS | |
| PTHR12983 | Panther | RING FINGER PROTEIN RNF10-RELATED | JGI | ISS | |
| PTHR12983:SF1 | Panther | RING FINGER PROTEIN RNF10-RELATED | JGI | ISS | |
| PF00097 | PFAM | Zinc finger, C3HC4 type (RING finger) | JGI | ISS | |
| UniRef100_G7KX94 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: RING finger protein n=1 Tax=Medicago truncatula RepID=G7KX94_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233E028 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E028 related cluster n=1 Tax=unknown RepID=UPI000233E028 | SoyBase | E_val: 0 | ISS |
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Glyma19g27633 not represented in the dataset |
Glyma19g27633 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g05310 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g103000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g27633.2 sequence type=transcript gene model=Glyma19g27633 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTGGCGCTAAAACTAAAACCGATATTCGGCAAAGATGCGGCAGAGATACCCACGGAGCCGCGAAGACACAGCCAGCACAATAAGTACATTCGACATAGTTTGGTTAAGTAGAATAGAAGCTGAACCTACGAAACAACCCTAAACCCCTCCTTCTAGAACTTTCATGTCCATCTTGCCCTCACAAACCCAAGCGGCATCTTCGTCTTCTTCCTCTGCGCCATCTCCCAACCCTAATCCCCAACATGGAACCGGAAACCCTATTCCTCAACCCTTCTCTTCTCTTTCCCCCTCACCAATCAACCTCGCTTTCGGATCTCTCCAGATCTCCGATACCCCAGGTTCGTCGTCTTCAGCCGCTCAAGATTCTGGTGGATCTTCCGGAAAGGTGACAGAAGTAGGGTCTCCAAGTGGAGTGATGGTTTCACCTGAACAAAACTCTAGAACACGTTCTAGGAGTCACGGGGCAAGATGGACCCGAACGCGAACTGGAACAGTTTCATATCATAGAAATCAACAAACTCCTGGGTCCGTCAGTTCTCATGGAAGTGCCCCTTTGCCGGGGAGAAAAGCTCAGACGGTGAATGGGAACTACTTGCTGAATTTTCAATATGACCCAATATCCCGTTCTCAACCACGGGGTCCTCCTCCTTCTCCTACAACAAGAAGGCATCGGAAGAGGAAGCCGTACAGCAAAGATTTGTTTTTGCAGGCGAATTACAAGTTCACGGTACTAGGTTCGGGAAATTATTCGCCTGAGTCGATGGATCCAGATAAAATGTTGCAGTGGGAAGATATTATATGCGTGACATATTTGACCCCTTTTTCAGTTCAGTGTCCAATTTGTTTGGAGTATCCCCTGTGTCCGCAGATAACCTCATGTGGACATATTTTCTGTTTCCCATGTATTCTACAGTACTTATTGATGGGTGAAGAGGATCACAAAGGTGATAGCTGGAAAAGGTGTCCTTTGTGCTTTGTGATGATATCTGCCAAGGATTTATATACGGTGCACATCACAAATGTCAAACAGTATCAAGTACGAGATAATGCTGAGTTCACCTTTTTAACGCGGAAAAAGGATTCCTTTACTCTGTCACTTAAAAATAAACAAGAGACAAATATCACATCACGTGCCAATGAAGATATCTGTGATCCCTTTTCTAAGTTCACTCTTACATCAGATGTAGATCTCTCGGTGAGACATGCAATATCTGATCTAGATGGTTGGCTAGCCAGAGCTGATTCAGGTCTTGTTGATGACCTGGAGAAGCTTCCTTATGTTTGTGCTGCAATGCAACAATTAGAACAGAGGAAGAGGTATTGGAGTGAGCTCAGGTCTCATGACAGTGAAAAATCTTCTAAGCTTAATGATTACGAACATCAGATACCGTCAACAGTTGCAAATTCTGTGGATAGTGACGATGAAAACTGTTCTAATGGATCAAGAACTTCCTCTTCTGATTTCCTTGATCAAAATAAGGTTATGATGTTGGATAAGTCAACTGCCGGAATCTGTTTGGATCAAAAGTTGGATGTGGAGAAAGAATTAATAGAGCAGGAAATGAATTTATCTTCTTCATATGAGGAGAAAAACGATATTCAAAGGCATTCAAGTGGTGTTGTTGGAGATGTGAAGGAAAATGATTCATACAGTTTCTACCAGGCTGCTGATGGTCAGCATCTAATTCTTCATCCTCTGAATATGAAGTGTTTGCTTCACCATTATGGGAGCTATGATATGCTTCCTCACAGAATAAGTGGAAGGATCCTACAATTGGAGTCAGTTACTCAGTCTGAGGCCATCAGGAGGCGCTATCGATTCCTTAGTCATTTTCCATTAACCACAACCTTTCAGCTTTGTGAAGTTGATTTGAGTGAGATGTTGCCTCCTGAAGCATTTTCCCCATTTATGGATGAAATCAAGAAGCGTGCAAATCAGAGGAAGCAACTTGCTAGAAAGCTCTTGGAAATTCAACCATATCATCAAGTCCTCCCTTAGCTGGGGAGAGAAAATCGTTCTCAAATGTTACTAGGCTTGGGTTTGCTGCTGCTCATGATTCTCCATCCTTACAAATTCAAGAAACTAGTGGTCTGCATAATAACAACACAACTGCTGATTCTTCTGTCACAACAGGTTTGAGAAATGGGGAGACACAATCATACTCCAATGCTACATCAAGAACAGAATCTAATATAAGCTCGAATGCACCAAAGACAAATGAGTTGGGGAAGAAGGGAAAGAAACCAAATCGAGTTCTTCTGTCAACAGCTGGTGGTAGGCGCTATTGATTTTGGTTGCCGACCCTTACCCTAGATTATGCGAGTGTCAATGATTCTCAGCCTCCTCCCTGCTATAGTCCCAAGCCAAACTCTCTGGCAGATGATTTCAGTGTAGAGTTAGTAACGTTCTACGGATCATATTTATGCACCTCTTAACTACTTGTAGGTAGGTAGGCATGTGTGGAGAGAATAAATGTTTTTAGCAATAAACAAGCCACAACTGTTAGAAGGTCAGTATATTGTTTCTGTGGATCTGTAGAACTGTGCTGGCGTTGGGTATGTTAATTAAATCCAGACTATGAGCATTGACTATACACAAGACATTTAAATTTGGAAGCGGGTTTTGTTAACTACAGATTGATTTTTTAAACAAACAATGTGTGTACTATCCTTAGTAATTTTGCTGGCTAGAGTATAATTATTATGGATGGTTAAAAAATTTCTGAGTATCTAACGTAATTGGACACCCAGAAATCAAATTC
>Glyma19g27633.1 sequence type=CDS gene model=Glyma19g27633 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCCATCTTGCCCTCACAAACCCAAGCGGCATCTTCGTCTTCTTCCTCTGCGCCATCTCCCAACCCTAATCCCCAACATGGAACCGGAAACCCTATTCCTCAACCCTTCTCTTCTCTTTCCCCCTCACCAATCAACCTCGCTTTCGGATCTCTCCAGATCTCCGATACCCCAGGTTCGTCGTCTTCAGCCGCTCAAGATTCTGGTGGATCTTCCGGAAAGGTGACAGAAGTAGGGTCTCCAAGTGGAGTGATGGTTTCACCTGAACAAAACTCTAGAACACGTTCTAGGAGTCACGGGGCAAGATGGACCCGAACGCGAACTGGAACAGTTTCATATCATAGAAATCAACAAACTCCTGGGTCCGTCAGTTCTCATGGAAGTGCCCCTTTGCCGGGGAGAAAAGCTCAGACGGTGAATGGGAACTACTTGCTGAATTTTCAATATGACCCAATATCCCGTTCTCAACCACGGGGTCCTCCTCCTTCTCCTACAACAAGAAGGCATCGGAAGAGGAAGCCGTACAGCAAAGATTTGTTTTTGCAGGCGAATTACAAGTTCACGGTACTAGGTTCGGGAAATTATTCGCCTGAGTCGATGGATCCAGATAAAATGTTGCAGTGGGAAGATATTATATGCGTGACATATTTGACCCCTTTTTCAGTTCAGTGTCCAATTTGTTTGGAGTATCCCCTGTGTCCGCAGATAACCTCATGTGGACATATTTTCTGTTTCCCATGTATTCTACAGTACTTATTGATGGGTGAAGAGGATCACAAAGGTGATAGCTGGAAAAGGTGTCCTTTGTGCTTTGTGATGATATCTGCCAAGGATTTATATACGGTGCACATCACAAATGTCAAACAGTATCAAGTACGAGATAATGCTGAGTTCACCTTTTTAACGCGGAAAAAGGATTCCTTTACTCTGTCACTTAAAAATAAACAAGAGACAAATATCACATCACGTGCCAATGAAGATATCTGTGATCCCTTTTCTAAGTTCACTCTTACATCAGATGTAGATCTCTCGGTGAGACATGCAATATCTGATCTAGATGGTTGGCTAGCCAGAGCTGATTCAGGTCTTGTTGATGACCTGGAGAAGCTTCCTTATGTTTGTGCTGCAATGCAACAATTAGAACAGAGGAAGAGGTATTGGAGTGAGCTCAGGTCTCATGACAGTGAAAAATCTTCTAAGCTTAATGATTACGAACATCAGATACCGTCAACAGTTGCAAATTCTGTGGATAGTGACGATGAAAACTGTTCTAATGGATCAAGAACTTCCTCTTCTGATTTCCTTGATCAAAATAAGGTTATGATGTTGGATAAGTCAACTGCCGGAATCTGTTTGGATCAAAAGTTGGATGTGGAGAAAGAATTAATAGAGCAGGAAATGAATTTATCTTCTTCATATGAGGAGAAAAACGATATTCAAAGGCATTCAAGTGGTGTTGTTGGAGATGTGAAGGAAAATGATTCATACAGTTTCTACCAGGCTGCTGATGGTCAGCATCTAATTCTTCATCCTCTGAATATGAAGTGTTTGCTTCACCATTATGGGAGCTATGATATGCTTCCTCACAGAATAAGTGGAAGGATCCTACAATTGGAGTCAGTTACTCAGTCTGAGGCCATCAGGAGGCGCTATCGATTCCTTAGTCATTTTCCATTAACCACAACCTTTCAGCTTTGTGAAGTTGATTTGAGTGAGATGTTGCCTCCTGAAGCATTTTCCCCATTTATGGATGAAATCAAGAAGCGTGCAAATCAGAGGAAGCAACTTGCTAGAAAGGAAAAGAAGGAAAAAATAATGGCTGAAGCTACTGCTGCTTATTCTCTTCCCATATCATTAAGTCATCAGTTTACTTCTCGCAATGATCCTCCAACATTCTCCATGGATGACTTTGAAGCTCTTGGAAATTCAACCATATCATCAAGTCCTCCCTTAGCTGGGGAGAGAAAATCGTTCTCAAATGTTACTAGGCTTGGGTTTGCTGCTGCTCATGATTCTCCATCCTTACAAATTCAAGAAACTAGTGGTCTGCATAATAACAACACAACTGCTGATTCTTCTGTCACAACAGGTTTGAGAAATGGGGAGACACAATCATACTCCAATGCTACATCAAGAACAGAATCTAATATAAGCTCGAATGCACCAAAGACAAATGAGTTGGGGAAGAAGGGAAAGAAACCAAATCGAGTTCTTCTGTCAACAGCTGGTGGTAGGCGCTATTGA >Glyma19g27633.2 sequence type=CDS gene model=Glyma19g27633 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCCATCTTGCCCTCACAAACCCAAGCGGCATCTTCGTCTTCTTCCTCTGCGCCATCTCCCAACCCTAATCCCCAACATGGAACCGGAAACCCTATTCCTCAACCCTTCTCTTCTCTTTCCCCCTCACCAATCAACCTCGCTTTCGGATCTCTCCAGATCTCCGATACCCCAGGTTCGTCGTCTTCAGCCGCTCAAGATTCTGGTGGATCTTCCGGAAAGGTGACAGAAGTAGGGTCTCCAAGTGGAGTGATGGTTTCACCTGAACAAAACTCTAGAACACGTTCTAGGAGTCACGGGGCAAGATGGACCCGAACGCGAACTGGAACAGTTTCATATCATAGAAATCAACAAACTCCTGGGTCCGTCAGTTCTCATGGAAGTGCCCCTTTGCCGGGGAGAAAAGCTCAGACGGTGAATGGGAACTACTTGCTGAATTTTCAATATGACCCAATATCCCGTTCTCAACCACGGGGTCCTCCTCCTTCTCCTACAACAAGAAGGCATCGGAAGAGGAAGCCGTACAGCAAAGATTTGTTTTTGCAGGCGAATTACAAGTTCACGGTACTAGGTTCGGGAAATTATTCGCCTGAGTCGATGGATCCAGATAAAATGTTGCAGTGGGAAGATATTATATGCGTGACATATTTGACCCCTTTTTCAGTTCAGTGTCCAATTTGTTTGGAGTATCCCCTGTGTCCGCAGATAACCTCATGTGGACATATTTTCTGTTTCCCATGTATTCTACAGTACTTATTGATGGGTGAAGAGGATCACAAAGGTGATAGCTGGAAAAGGTGTCCTTTGTGCTTTGTGATGATATCTGCCAAGGATTTATATACGGTGCACATCACAAATGTCAAACAGTATCAAGTACGAGATAATGCTGAGTTCACCTTTTTAACGCGGAAAAAGGATTCCTTTACTCTGTCACTTAAAAATAAACAAGAGACAAATATCACATCACGTGCCAATGAAGATATCTGTGATCCCTTTTCTAAGTTCACTCTTACATCAGATGTAGATCTCTCGGTGAGACATGCAATATCTGATCTAGATGGTTGGCTAGCCAGAGCTGATTCAGGTCTTGTTGATGACCTGGAGAAGCTTCCTTATGTTTGTGCTGCAATGCAACAATTAGAACAGAGGAAGAGGTATTGGAGTGAGCTCAGGTCTCATGACAGTGAAAAATCTTCTAAGCTTAATGATTACGAACATCAGATACCGTCAACAGTTGCAAATTCTGTGGATAGTGACGATGAAAACTGTTCTAATGGATCAAGAACTTCCTCTTCTGATTTCCTTGATCAAAATAAGGTTATGATGTTGGATAAGTCAACTGCCGGAATCTGTTTGGATCAAAAGTTGGATGTGGAGAAAGAATTAATAGAGCAGGAAATGAATTTATCTTCTTCATATGAGGAGAAAAACGATATTCAAAGGCATTCAAGTGGTGTTGTTGGAGATGTGAAGGAAAATGATTCATACAGTTTCTACCAGGCTGCTGATGGTCAGCATCTAATTCTTCATCCTCTGAATATGAAGTGTTTGCTTCACCATTATGGGAGCTATGATATGCTTCCTCACAGAATAAGTGGAAGGATCCTACAATTGGAGTCAGTTACTCAGTCTGAGGCCATCAGGAGGCGCTATCGATTCCTTAGTCATTTTCCATTAACCACAACCTTTCAGCTTTGTGAAGTTGATTTGAGTGAGATGTTGCCTCCTGAAGCATTTTCCCCATTTATGGATGAAATCAAGAAGCGTGCAAATCAGAGGAAGCAACTTGCTAGAAAGCTCTTGGAAATTCAACCATATCATCAAGTCCTCCCTTAG
>Glyma19g27633.1 sequence type=predicted peptide gene model=Glyma19g27633 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSILPSQTQAASSSSSSAPSPNPNPQHGTGNPIPQPFSSLSPSPINLAFGSLQISDTPGSSSSAAQDSGGSSGKVTEVGSPSGVMVSPEQNSRTRSRSHGARWTRTRTGTVSYHRNQQTPGSVSSHGSAPLPGRKAQTVNGNYLLNFQYDPISRSQPRGPPPSPTTRRHRKRKPYSKDLFLQANYKFTVLGSGNYSPESMDPDKMLQWEDIICVTYLTPFSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGEEDHKGDSWKRCPLCFVMISAKDLYTVHITNVKQYQVRDNAEFTFLTRKKDSFTLSLKNKQETNITSRANEDICDPFSKFTLTSDVDLSVRHAISDLDGWLARADSGLVDDLEKLPYVCAAMQQLEQRKRYWSELRSHDSEKSSKLNDYEHQIPSTVANSVDSDDENCSNGSRTSSSDFLDQNKVMMLDKSTAGICLDQKLDVEKELIEQEMNLSSSYEEKNDIQRHSSGVVGDVKENDSYSFYQAADGQHLILHPLNMKCLLHHYGSYDMLPHRISGRILQLESVTQSEAIRRRYRFLSHFPLTTTFQLCEVDLSEMLPPEAFSPFMDEIKKRANQRKQLARKEKKEKIMAEATAAYSLPISLSHQFTSRNDPPTFSMDDFEALGNSTISSSPPLAGERKSFSNVTRLGFAAAHDSPSLQIQETSGLHNNNTTADSSVTTGLRNGETQSYSNATSRTESNISSNAPKTNELGKKGKKPNRVLLSTAGGRRY* >Glyma19g27633.2 sequence type=predicted peptide gene model=Glyma19g27633 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSILPSQTQAASSSSSSAPSPNPNPQHGTGNPIPQPFSSLSPSPINLAFGSLQISDTPGSSSSAAQDSGGSSGKVTEVGSPSGVMVSPEQNSRTRSRSHGARWTRTRTGTVSYHRNQQTPGSVSSHGSAPLPGRKAQTVNGNYLLNFQYDPISRSQPRGPPPSPTTRRHRKRKPYSKDLFLQANYKFTVLGSGNYSPESMDPDKMLQWEDIICVTYLTPFSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGEEDHKGDSWKRCPLCFVMISAKDLYTVHITNVKQYQVRDNAEFTFLTRKKDSFTLSLKNKQETNITSRANEDICDPFSKFTLTSDVDLSVRHAISDLDGWLARADSGLVDDLEKLPYVCAAMQQLEQRKRYWSELRSHDSEKSSKLNDYEHQIPSTVANSVDSDDENCSNGSRTSSSDFLDQNKVMMLDKSTAGICLDQKLDVEKELIEQEMNLSSSYEEKNDIQRHSSGVVGDVKENDSYSFYQAADGQHLILHPLNMKCLLHHYGSYDMLPHRISGRILQLESVTQSEAIRRRYRFLSHFPLTTTFQLCEVDLSEMLPPEAFSPFMDEIKKRANQRKQLARKLLEIQPYHQVLP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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