Report for Sequence Feature Glyma19g27520
Feature Type: gene_model
Chromosome: Gm19
Start: 34842962
stop: 34845409
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g27520
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G02010 AT
Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR) superfamily protein | chr3:337965-340442 FORWARD LENGTH=825
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
PTHR24015 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24015:SF99 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF01535 PFAM
PPR repeat
JGI ISS
UniRef100_G7KX86 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7KX86_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI000233E725 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233E725 related cluster n=1 Tax=unknown RepID=UPI000233E725
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g27520
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma19g27520
Paralog Evidence Comments
Glyma16g05360 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g27520 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g102300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g27520
Coding sequences of Glyma19g27520
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g27520.1 sequence type=CDS gene model=Glyma19g27520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAATCTCATAAAATCATGTACGAGGAAAACCCATCTCCACAACCTCGGCACCTTGACTTCGCCAAAACGACACTTTCAACATGTCGATGCTTCCATGATCAAGACAGGCTTCGATCCCAACACGTGCCGTTTCAATTTCCAAGTTCAGACCCATCTCCAGCGCGGGGATTTGGGCGCAGCACGCAAACTGTTCGACGAAATGCCTCACAAGAACGTCATCTCCACCAACACCATGATCATGGGTTACCTAAAATCTGGTAACCTTTCCACTGCTAGGAGCCTGTTTGACAGCATGGTTCAACGCTCGGTTGTTACCTGGACAATGCTGATTGGTGGCTATGCTCAGCACAACCGGTTTCTCGAAGCTTTCAATCTCTTTGCCGATATGTGTAGACACGGAATGGTTCCGGATCATATCACCTTGGCCACTCTCTTATCTGGGTTCACTGAATTTGAATCTGTAAACGAAGTAGCACAAGTGCATGGCCATGTTGTCAAAGTGGGGTATGATTCCACCCTCATGGTTTGCAACTCGTTGCTTGATTCTTACTGTAAGACGCGTAGCCTCGGTTTGGCTTGTCACCTCTTCAAGCATATGGCAGAGAAAGATAATGTCACTTTCAATGCATTGTTGACTGGGTACTCCAAAGAGGGGTTCAATCATGACGCCATAAACCTATTTTTCAAGATGCAGGATTTGGGGTTTAGGCCCTCGGAATTTACTTTTGCTGCGGTTTTAACTGCTGGGATACAGATGGATGATATAGAGTTTGGGCAACAAGTTCACAGTTTTGTGGTGAAGTGTAATTTTGTGTGGAATGTGTTTGTGGCTAATGCTTTGCTTGATTTCTACTCGAAGCATGATCGGATTGTTGAGGCAAGGAAGCTTTTTTATGAGATGCCAGAGGTGGATGGTATCTCTTACAATGTGCTCATCACGTGTTGTGCATGGAATGGAAGAGTTGAAGAATCTCTTGAACTTTTCAGGGAGTTACAGTTTACTAGATTTGACCGGAGGCAATTCCCCTTTGCTACCTTGTTGAGCATTGCTGCAAATTCTTTGAACCTGGAAATGGGTAGGCAAATCCATTCCCAGGCTATTGTAACAGATGCCATTTCGGAAGTTCTAGTTGGGAATTCTTTGGTTGACATGTATGCTAAATGTGACAAATTTGGGGAAGCAAATAGGATTTTTGCTGATCTGGCACATCAAAGTTCAGTTCCATGGACAGCTTTGATCTCAGGTTATGTTCAGAAGGGACTACATGAAGATGGCCTAAAGCTATTCGTTGAGATGCACAGAGCCAAAATAGGTGCTGACTCGGCCACTTATGCCAGCATCTTAAGAGCCTGTGCAAATCTAGCTTCACTGACACTAGGAAAACAGTTACACTCACGTATAATCAGATCAGGATGCCTTTCAAATGTATTTTCTGGGAGTGCACTGGTTGACATGTATGCAAAATGTGGATCCATAAAAGAAGCACTTCAAATGTTTCAAGAGATGCCTGTGAGGAATTCTGTCTCCTGGAATGCACTGATTTCAGCCTATGCACAAAACGGAGACGGTGGCCATGCTCTTAGATCATTTGAACAAATGATTCATTCAGGTCTGCAACCAAATTCTGTTAGCTTCCTTAGCATTCTATGTGCTTGCAGCCACTGTGGTCTTGTTGAAGAAGGACTACAGTACTTTAACTCCATGACTCAAGTGTATAAACTTGAACCCAGAAGAGAACATTATGCATCAATGGTTGATATGTTATGTCGTAGTGGAAGATTTGATGAGGCTGAGAAATTGATGGCTCGGATGCCATTTGAACCGGATGAGATAATGTGGTCATCAATTCTCAACTCATGTAGGATCCATAAGAATCAAGAGTTGGCAATTAAAGCAGCAGACCAACTATTCAATATGAAGGGCCTTAGAGATGCTGCTCCATATGTTAGCATGTCCAATATCTATGCAGCAGCTGGTGAATGGGACAGTGTGGGAAAGGTGAAGAAGGCCTTGAGAGAACGAGGGATCAGAAAGGTCCCGGCATACAGCTGGGTTGAAATCAAACAGAAGACCCATGTTTTCTCCGCCAATGACACGTCTCACCCACAGACGAAAGAGATAACGAGGAAGCTTGATGAACTGGAAAAGCAAATGGAGGAACAAGGGTATAAACCTGACTCAACTTGTGCCCTTCACAATGTGGACGAGGAAGTCAAGGTAGAGTCACTAAAATATCACAGTGAACGCATTGCCATTGCCTTTGCACTAATTAGCACCCCAAAGGGGTCACCCATATTGGTGATGAAGAATCTACGAGCTTGTAATGATTGTCATGCTGCTATCAAGGTAATCTCCAAGATTGTAAATAGGGAAATCACAGTCAGGGATTCAAGTAGATTCCATCATTTCACAGATGGATCTTGCTCCTGTAAGGACTACTGGTAG
Predicted protein sequences of Glyma19g27520
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g27520.1 sequence type=predicted peptide gene model=Glyma19g27520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MNLIKSCTRKTHLHNLGTLTSPKRHFQHVDASMIKTGFDPNTCRFNFQVQTHLQRGDLGAARKLFDEMPHKNVISTNTMIMGYLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLATLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKIGADSATYASILRACANLASLTLGKQLHSRIIRSGCLSNVFSGSALVDMYAKCGSIKEALQMFQEMPVRNSVSWNALISAYAQNGDGGHALRSFEQMIHSGLQPNSVSFLSILCACSHCGLVEEGLQYFNSMTQVYKLEPRREHYASMVDMLCRSGRFDEAEKLMARMPFEPDEIMWSSILNSCRIHKNQELAIKAADQLFNMKGLRDAAPYVSMSNIYAAAGEWDSVGKVKKALRERGIRKVPAYSWVEIKQKTHVFSANDTSHPQTKEITRKLDELEKQMEEQGYKPDSTCALHNVDEEVKVESLKYHSERIAIAFALISTPKGSPILVMKNLRACNDCHAAIKVISKIVNREITVRDSSRFHHFTDGSCSCKDYW*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
